RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 CD81P60033 236 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 RPL8P62917 257 aaKnown RBP12.89□□□□□ -0.35
USH1C-204ENST00000526313 FLI1Q01543 452 aaPredicted RBP12.89□□□□□ -0.35
USH1C-204ENST00000526313 WDR25Q64LD2 544 aaPredicted RBP12.89□□□□□ -0.35
USH1C-204ENST00000526313 DTX2Q86UW9 622 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 VSTM2AQ8TAG5 236 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 NIPSNAP3BQ9BS92 247 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 TMPRSS5Q9H3S3 457 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 IGHV2-26A0A0B4J1V2 119 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 A0A1W2PPH5 198 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 SMCO3A2RU48 225 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 CRYBA1P05813 215 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 SOD3P08294 240 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 TEPPQ6URK8 271 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 BEND2Q8NDZ0 799 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 HIST1H2BAQ96A08 127 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 YPEL4Q96NS1 127 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 HINT2Q9BX68 163 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 MANBALQ9NQG1 85 aa12.89□□□□□ -0.35
USH1C-204ENST00000526313 ITPR1Q14643 2758 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 HMGB3O15347 200 aaKnown RBP12.88□□□□□ -0.35
USH1C-204ENST00000526313 RNASE2P10153 161 aaKnown RBP12.88□□□□□ -0.35
USH1C-204ENST00000526313 PRRX1P54821 245 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 MEF2BQ02080 365 aaPredicted RBP12.88□□□□□ -0.35
USH1C-204ENST00000526313 HLA-DRB5Q30154 266 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 RNF212Q495C1 297 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 GCSAMLQ5JQS6 135 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 AVPI1Q5T686 147 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 KCNIP2Q9NS61 270 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 PXMP4Q9Y6I8 212 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 COL6A6A6NMZ7 2263 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 PPIAL4CA0A0B4J2A2 164 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 MT-ND4LP03901 98 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 PPIAL4GP0DN37 164 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 LGALS7P47929 136 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 CEBPGP53567 150 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 OR8B3Q8NGG8 313 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 OR8B2Q96RD0 313 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 COMMD5Q9GZQ3 224 aa12.88□□□□□ -0.35
USH1C-204ENST00000526313 CGB1A6NKQ9 187 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 TMEM250H0YL14 139 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 DLL1O00548 723 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 OPN1MWP04001 364 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 OPN1MW2P0DN77 364 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 OPN1MW3P0DN78 364 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 AGAP20933 346 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 RPL29P47914 159 aaKnown RBP12.87□□□□□ -0.35
USH1C-204ENST00000526313 PSMB3P49720 205 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 MRGPRG-AS1Q2M3A8 158 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 MIC13Q5XKP0 118 aa12.87□□□□□ -0.35
USH1C-204ENST00000526313 HIVEP3Q5T1R4 2406 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 PIEZO1Q92508 2521 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 B4DEV8 164 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 E7EUB6 86 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 PNRC1Q12796 327 aaPredicted RBP12.86□□□□□ -0.35
USH1C-204ENST00000526313 C4orf17Q53FE4 359 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 TMEM144Q7Z5S9 345 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 OR10W1Q8NGF6 305 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 RITA1Q96K30 269 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 CLEC7AQ9BXN2 247 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 CACNA1AO00555 2505 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 A0A1W2PPE2 198 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 BUB1B-PAK6H3BSN5 160 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 DEFA4P12838 97 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 PRR20EP86478 221 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 PRR20CP86479 221 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 PRR20DP86480 221 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 PRR20BP86481 221 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 PRR20AP86496 221 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 SDF2L1Q9HCN8 221 aa12.86□□□□□ -0.35
USH1C-204ENST00000526313 TPRP12270 2363 aaKnown RBP12.86□□□□□ -0.35
USH1C-204ENST00000526313 A0A1W2PN81 502 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 A0A1W2PPR1 153 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 LY6LH3BQJ8 138 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 LY6HO94772 140 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 STAG3L2P0CL84 134 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 STAG3L3P0CL85 134 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 CHRNA7P36544 502 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 RAB31Q13636 194 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 GATAD1Q8WUU5 269 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 ITLN2Q8WWU7 325 aaPredicted RBP12.85□□□□□ -0.35
USH1C-204ENST00000526313 ISOC2Q96AB3 205 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 TIMD4Q96H15 378 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 ZNF430Q9H8G1 570 aaPredicted RBP12.85□□□□□ -0.35
USH1C-204ENST00000526313 MLXQ9UH92 298 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 SLC45A2Q9UMX9 530 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 HRNRQ86YZ3 2850 aaPredicted RBP12.85□□□□□ -0.35
USH1C-204ENST00000526313 C22orf46C9J442 243 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 LIPFP07098 398 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 CRYGBP07316 175 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 LINC00869P0C866 280 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 ERHP84090 104 aaKnown RBP12.85□□□□□ -0.35
USH1C-204ENST00000526313 VMA21Q3ZAQ7 101 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 TEX45Q8NA69 505 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 CACNG8Q8WXS5 425 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 PATZ1Q9HBE1 687 aaKnown RBP12.85□□□□□ -0.35
USH1C-204ENST00000526313 SIRT7Q9NRC8 400 aa12.85□□□□□ -0.35
USH1C-204ENST00000526313 LRBAP50851 2863 aa12.84□□□□□ -0.35
USH1C-204ENST00000526313 A0A1W2PPV4 95 aa12.84□□□□□ -0.35
USH1C-204ENST00000526313 CXorf65A6NEN9 183 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms