RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 GSG1LQ6UXU4 331 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 CENPVQ7Z7K6 275 aaPredicted RBP12.04□□□□□ -0.48
LSM1-203ENST00000520755 OR1S1Q8NH92 325 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 GRPEL2Q8TAA5 225 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 CHAC2Q8WUX2 184 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 ARPC1AQ92747 370 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 C2orf50Q96LR7 162 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 WNT10AQ9GZT5 417 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.04□□□□□ -0.48
LSM1-203ENST00000520755 HSPB7Q9UBY9 170 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 ZNF257Q9Y2Q1 563 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 C5orf51A6NDU8 294 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 CNIH1O95406 144 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 CRIP2P52943 208 aaPredicted RBP12.03□□□□□ -0.48
LSM1-203ENST00000520755 PDLIM3Q53GG5 364 aaPredicted RBP12.03□□□□□ -0.48
LSM1-203ENST00000520755 C19orf54Q5BKX5 351 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 CXorf66Q5JRM2 361 aaPredicted RBP12.03□□□□□ -0.48
LSM1-203ENST00000520755 STPG2Q8N412 459 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 C11orf44Q8N8P7 122 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 OR5B3Q8NH48 314 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 ZNF747Q9BV97 191 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 COMMD5Q9GZQ3 224 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 NDUFA4L2Q9NRX3 87 aa12.03□□□□□ -0.48
LSM1-203ENST00000520755 IGLC7A0M8Q6 106 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 PSMB11A5LHX3 300 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 HMX3A6NHT5 357 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 RBMXL2O75526 392 aaKnown RBP12.02□□□□□ -0.49
LSM1-203ENST00000520755 APELAP0DMC3 54 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 HSPE1P61604 102 aaKnown RBP12.02□□□□□ -0.49
LSM1-203ENST00000520755 PRCDQ00LT1 54 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 TNFRSF9Q07011 255 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 C10orf99Q6UWK7 81 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 ZNF329Q86UD4 541 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 OR10W1Q8NGF6 305 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 OR1L8Q8NGR8 309 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 OR52E5Q8NH55 327 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 SPATA3Q8NHX4 192 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 RCL1Q9Y2P8 373 aaKnown RBP12.02□□□□□ -0.49
LSM1-203ENST00000520755 WSB1Q9Y6I7 421 aa12.02□□□□□ -0.49
LSM1-203ENST00000520755 ACTL6BO94805 426 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 MBPP02686 304 aaPredicted RBP12.01□□□□□ -0.49
LSM1-203ENST00000520755 IGF1P05019 195 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 AREGP15514 252 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 SPCS3P61009 180 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 SLC35B1P78383 322 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 ID3Q02535 119 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 WT1-ASQ06250 92 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 ECSCRQ19T08 205 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 HIST2H2BDQ6DRA6 164 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 C19orf35Q6ZS72 473 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 OR5AU1Q8NGC0 362 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 SGMS2Q8NHU3 365 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 FYTTD1Q96QD9 318 aaKnown RBP12.01□□□□□ -0.49
LSM1-203ENST00000520755 NMES1Q9C002 83 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 MAGT1Q9H0U3 335 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 RBKSQ9H477 322 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 FKBP11Q9NYL4 201 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 GSKIPQ9P0R6 139 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 ZNF580Q9UK33 172 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 TENM1Q9UKZ4 2725 aa12.01□□□□□ -0.49
LSM1-203ENST00000520755 TRAV41A0A0B4J266 112 aa12□□□□□ -0.49
LSM1-203ENST00000520755 MSGN1A6NI15 193 aa12□□□□□ -0.49
LSM1-203ENST00000520755 FAM90A26D6RGX4 464 aa12□□□□□ -0.49
LSM1-203ENST00000520755 G3V318 75 aa12□□□□□ -0.49
LSM1-203ENST00000520755 FBXO24O75426 580 aa12□□□□□ -0.49
LSM1-203ENST00000520755 IFNA17P01571 189 aa12□□□□□ -0.49
LSM1-203ENST00000520755 TRAPPC2P0DI81 140 aa12□□□□□ -0.49
LSM1-203ENST00000520755 TRAPPC2BP0DI82 140 aa12□□□□□ -0.49
LSM1-203ENST00000520755 CD28P10747 220 aa12□□□□□ -0.49
LSM1-203ENST00000520755 NKX2-1P43699 371 aaPredicted RBP12□□□□□ -0.49
LSM1-203ENST00000520755 BCAP31P51572 246 aa12□□□□□ -0.49
LSM1-203ENST00000520755 POLR2GP62487 172 aaKnown RBP eCLIP12□□□□□ -0.49
LSM1-203ENST00000520755 CFHR3Q02985 330 aa12□□□□□ -0.49
LSM1-203ENST00000520755 LFNGQ8NES3 379 aa12□□□□□ -0.49
LSM1-203ENST00000520755 WIPF2Q8TF74 440 aaPredicted RBP12□□□□□ -0.49
LSM1-203ENST00000520755 PDCD10Q9BUL8 212 aa12□□□□□ -0.49
LSM1-203ENST00000520755 HINT2Q9BX68 163 aa12□□□□□ -0.49
LSM1-203ENST00000520755 GON7Q9BXV9 100 aa12□□□□□ -0.49
LSM1-203ENST00000520755 ZNF436Q9C0F3 470 aaPredicted RBP12□□□□□ -0.49
LSM1-203ENST00000520755 C11orf1Q9H5F2 150 aa12□□□□□ -0.49
LSM1-203ENST00000520755 G3V3Q6 166 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 K7EPK0 472 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 SCGB1D2O95969 90 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 REG1AP05451 166 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 RAB32Q13637 225 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 UNQ5815/PRO19632Q6UWF5 114 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 SHISA2Q6UWI4 295 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 OR4X2Q8NGF9 303 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 CITED1Q99966 193 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 STAB1Q9NY15 2570 aa11.99□□□□□ -0.49
LSM1-203ENST00000520755 INS-IGF2F8WCM5 200 aa11.98□□□□□ -0.49
LSM1-203ENST00000520755 SOX15O60248 233 aa11.98□□□□□ -0.49
LSM1-203ENST00000520755 TMEM50AO95807 157 aa11.98□□□□□ -0.49
LSM1-203ENST00000520755 GIPP09681 153 aaPredicted RBP11.98□□□□□ -0.49
LSM1-203ENST00000520755 HOXA1P49639 335 aaPredicted RBP11.98□□□□□ -0.49
LSM1-203ENST00000520755 TMEM267Q0VDI3 215 aaPredicted RBP11.98□□□□□ -0.49
LSM1-203ENST00000520755 DTD1Q8TEA8 209 aa11.98□□□□□ -0.49
LSM1-203ENST00000520755 PLEKHA3Q9HB20 300 aa11.98□□□□□ -0.49
LSM1-203ENST00000520755 DNHD1Q96M86 4753 aa11.98□□□□□ -0.49
LSM1-203ENST00000520755 TRAV14DV4A0A0A6YYC5 116 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms