RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PGPEP1LA6NFU8 196 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 PSPNO60542 156 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 ZNF525Q8N782 197 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 THYN1Q9P016 225 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 PCDH15Q96QU1 1955 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 BMPR1BO00238 502 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 SLC17A3O00476 420 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 MPDU1O75352 247 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 OR5AL1P0C617 328 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 GLRXP35754 106 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 ATP5G3P48201 142 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 NUBP1P53384 320 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 RPL24P83731 157 aaKnown RBP9.83□□□□□ -0.84
SYNPO-204ENST00000519664 ID3Q02535 119 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 ELOBQ15370 118 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 GCSAMLQ5JQS6 135 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 PRNTQ86SH4 94 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 STPG3Q8N7X2 389 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 FAM122AQ96E09 287 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 CYYR1Q96J86 154 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 NABP2Q9BQ15 211 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 IDI2-AS1Q9NZ38 188 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 JPT1Q9UK76 154 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 ADCYAP1P18509 176 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 NHLH1Q02575 133 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 LRRC75BQ2VPJ9 315 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 ZNF506Q5JVG8 444 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 WDR73Q6P4I2 378 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 BMPERQ8N8U9 685 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 CCL3L1P16619 93 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 CBLN1P23435 193 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 HOXA4Q00056 320 aaPredicted RBP9.83□□□□□ -0.84
SYNPO-204ENST00000519664 RNF2Q99496 336 aa9.83□□□□□ -0.84
SYNPO-204ENST00000519664 HYPMO75409 117 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 MOSP00540 346 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 ORM1P02763 201 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 SRP14P37108 136 aaKnown RBP9.82□□□□□ -0.84
SYNPO-204ENST00000519664 SPATA45Q537H7 98 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 IBA57Q5T440 356 aaKnown RBP9.82□□□□□ -0.84
SYNPO-204ENST00000519664 HIST1H2BLQ99880 126 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 CD59P13987 128 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 GFRA1P56159 465 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 GCSAMQ8N6F7 178 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 PERPQ96FX8 193 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 COX19Q49B96 90 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 C5orf17Q8NAS9 161 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 GATAD1Q8WUU5 269 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 P2RX4Q99571 388 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 ALKBH7Q9BT30 221 aaPredicted RBP9.82□□□□□ -0.84
SYNPO-204ENST00000519664 IGF2RP11717 2491 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 TLN1Q9Y490 2541 aaKnown RBP9.82□□□□□ -0.84
SYNPO-204ENST00000519664 C1QTNF9BB2RNN3 333 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 IL18BPO95998 194 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 CGAP01215 116 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 FAM87AP0C7U9 286 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 IGFBP2P18065 325 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 ERVFRD-1P60508 538 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 NRN1LQ496H8 165 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 CLDND2Q8NHS1 167 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 MIEN1Q9BRT3 115 aa9.82□□□□□ -0.84
SYNPO-204ENST00000519664 GSX1Q9H4S2 264 aaPredicted RBP9.82□□□□□ -0.84
SYNPO-204ENST00000519664 PLXNA2O75051 1894 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 NCOR2Q9Y618 2525 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 ZNF207O43670 478 aaKnown RBP9.81□□□□□ -0.84
SYNPO-204ENST00000519664 WDR82Q6UXN9 313 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 ABHD17AQ96GS6 310 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 IMMP2LQ96T52 175 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 AMMECR1Q9Y4X0 333 aaPredicted RBP9.81□□□□□ -0.84
SYNPO-204ENST00000519664 PCNX3Q9H6A9 2034 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 IGHV3OR16-13A0A075B7E8 117 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 IGHV3OR16-8A0A075B7F1 116 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 IGHV3-74A0A0B4J1X5 117 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 CGB1A6NKQ9 187 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 SOD3P08294 240 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 ZNF883P0CG24 379 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 MPZP25189 248 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 PSMG3Q9BT73 122 aaPredicted RBP9.81□□□□□ -0.84
SYNPO-204ENST00000519664 APCSP02743 223 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 TIMM23BQ5SRD1 257 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 UFC1Q9Y3C8 167 aa9.81□□□□□ -0.84
SYNPO-204ENST00000519664 CEP295Q9C0D2 2601 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 MAJINQ3KP22 176 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 C20orf204Q6ZNR8 217 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 OR4D5Q8NGN0 318 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 TMEM171Q8WVE6 324 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 SEMA5BQ9P283 1151 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 OTX1P32242 354 aaPredicted RBP9.8□□□□□ -0.84
SYNPO-204ENST00000519664 NTF4P34130 210 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 ICAM4Q14773 271 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 PCSK4Q6UW60 755 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 C19orf35Q6ZS72 473 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 TMEM208Q9BTX3 173 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 CIDEAO60543 219 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 CD40P25942 277 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 BRS3P32247 399 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 B3GALT5-AS1P59052 145 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 ZNF324BQ6AW86 544 aaPredicted RBP9.8□□□□□ -0.84
SYNPO-204ENST00000519664 METRNQ9UJH8 293 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 LOC389332A0A1B0GUA5 103 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 LYNX1G3V0Z9 82 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms