RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 EEDO75530 441 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 CDRT1O95170 752 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 KLF8O95600 359 aaPredicted RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 CD160O95971 181 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 INSP01308 110 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 GAPDHP04406 335 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 SCTP09683 121 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 OR4A8P0C604 315 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SFTA3P0C7M3 94 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 LINC00032P0C843 101 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 TRGC1P0CF51 173 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 AKAIN1P0CW23 69 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CD99P14209 185 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 ZNF43P17038 809 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CSRP1P21291 193 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 GADD45AP24522 165 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CDK2P24941 298 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 LOXP28300 417 aaPredicted RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 RPL12P30050 165 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 PYCR1P32322 319 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 HRH1P35367 487 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 G6PCP35575 357 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 GLRXP35754 106 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 NSG1P42857 185 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 OR1E2P47887 323 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 P2RY1P47900 373 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CXCL12P48061 93 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 EFNB2P52799 333 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 PSG9Q00887 426 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 KLRB1Q12918 225 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 ZNF266Q14584 549 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 MMDQ15546 238 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 BATFQ16520 125 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 TAL2Q16559 108 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 OR10J3Q5JRS4 329 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SOHLH1Q5JUK2 328 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 LY6G6FQ5SQ64 297 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 BCL2L15Q5TBC7 163 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CNIH2Q6PI25 160 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 Q6Q795 121 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 EPGNQ6UW88 154 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SBSNQ6UWP8 590 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 C12orf54Q6X4T0 127 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 H2AFVQ71UI9 128 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 COMMD6Q7Z4G1 85 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 BLIDQ8IZY5 108 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 KCNRGQ8N5I3 272 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 DEFB125Q8N687 156 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 COX18Q8N8Q8 333 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 OR52I1Q8NGK6 324 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 OR4C13Q8NGP0 309 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 OR2T27Q8NH04 317 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 MFSD8Q8NHS3 518 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 PPTC7Q8NI37 304 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 THEM6Q8WUY1 208 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SLC25A46Q96AG3 418 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 MUCL1Q96DR8 90 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 PELI1Q96FA3 418 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 ZNF681Q96N22 645 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 PITX2Q99697 317 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SPIN2AQ99865 258 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 RASL11BQ9BPW5 248 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SPIN2BQ9BPZ2 258 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 NIPSNAP3BQ9BS92 247 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SMIM3Q9BZL3 60 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SH3BGRL3Q9H299 93 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 HES4Q9HCC6 221 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SH2D2AQ9NP31 389 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 RPRMQ9NS64 109 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 RBM22Q9NW64 420 aaKnown RBP eCLIP1.27□□□□□ -2.21
NUP54-208ENST00000508604 EHFQ9NZC4 300 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 KCNIP1Q9NZI2 227 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CCDC167Q9P0B6 97 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 TP53TG1Q9Y2A0 90 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 POLDIP2Q9Y2S7 368 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 YARS2Q9Y2Z4 477 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 HDGFL3Q9Y3E1 203 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 IER3IP1Q9Y5U9 82 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 SOX21Q9Y651 276 aaPredicted RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 AFDNP55196 1824 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 XIRP1Q702N8 1843 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 NCKAP5O14513 1909 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CITO14578 2027 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 CHD3Q12873 2000 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 DIP2CQ9Y2E4 1556 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 DOCK1Q14185 1865 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 PDCD11Q14690 1871 aaKnown RBP1.27□□□□□ -2.21
NUP54-208ENST00000508604 ALKQ9UM73 1620 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 RGPD1P0DJD0 1748 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 DOCK2Q92608 1830 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 AHNAK2Q8IVF2 5795 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 MICAL3Q7RTP6 2002 aa1.27□□□□□ -2.21
NUP54-208ENST00000508604 TRBV24-1A0A075B6N3 115 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 A0A1B0GV50 99 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 DUXBA0A1W2PPF3 345 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 A6NDN8 102 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CD300LBA8K4G0 201 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 C9JAW5 83 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 F8W1H4 67 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms