RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 Q8TCH9 128 aa14.12□□□□□ -0.15
SQSTM1-211ENST00000506690 SLC25A10Q9UBX3 287 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-211ENST00000506690 PSG11Q9UQ72 335 aa14.12□□□□□ -0.15
SQSTM1-211ENST00000506690 IZUMO1RA6ND01 250 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 DUTP33316 252 aaKnown RBP14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 PRR20EP86478 221 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 PRR20CP86479 221 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 PRR20DP86480 221 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 PRR20BP86481 221 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 PRR20AP86496 221 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 TNXAQ16473 311 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 RNF151Q2KHN1 245 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 IBA57Q5T440 356 aaKnown RBP14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 DUSP23Q9BVJ7 150 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 CACNA1EQ15878 2313 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 IGHV3-64DA0A0J9YX35 117 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 PROP1O75360 226 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 RPS20P60866 119 aaKnown RBP14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 LRRC10Q5BKY1 277 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 MIR17HGQ75NE6 70 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 WIPF2Q8TF74 440 aaPredicted RBP14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 TMEM167BQ9NRX6 74 aa14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 TECRQ9NZ01 308 aaKnown RBP14.11□□□□□ -0.15
SQSTM1-211ENST00000506690 IGHV3-43A0A0B4J1X8 118 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 FCGR3BO75015 233 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 IGHV3-43DP0DP04 118 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 USF1P22415 310 aaPredicted RBP14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 SSTR5P35346 364 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 RELBQ01201 579 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 Q0VFX4 171 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 LYSMD4Q5XG99 296 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 Q6ZR03 302 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 TIPARPQ7Z3E1 657 aaKnown RBP14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 SPACA3Q8IXA5 215 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 C2orf70A6NJV1 201 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 PSG5Q15238 335 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 Q56UQ5 140 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 RASL11AQ6T310 242 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 SLC24A4Q8NFF2 622 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 IGF2BP2-AS1Q96M15 143 aa14.1□□□□□ -0.15
SQSTM1-211ENST00000506690 HSBP1O75506 76 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 GABRA2P47869 451 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 KLF5Q13887 457 aaPredicted RBP14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 FAM214BQ7L5A3 538 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 FSCN3Q9NQT6 498 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 ZNF331Q9NQX6 463 aaPredicted RBP14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 DOCK7Q96N67 2140 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 TRAV3A0A0B4J244 114 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 TRGV8A0A0C4DH27 118 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 ZNF891A8MT65 544 aaPredicted RBP14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 DEFB108AA8MXU0 73 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 M0QZ24 198 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 PPOXP50336 477 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 UBE2G1P62253 170 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 RAB31Q13636 194 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 VAMP3Q15836 100 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 VKORC1L1Q8N0U8 176 aa14.09□□□□□ -0.15
SQSTM1-211ENST00000506690 AHRRA9YTQ3 701 aa14.08□□□□□ -0.16
SQSTM1-211ENST00000506690 GRPP07492 148 aa14.08□□□□□ -0.16
SQSTM1-211ENST00000506690 FOLR3P41439 243 aa14.08□□□□□ -0.16
SQSTM1-211ENST00000506690 OR13A1Q8NGR1 328 aa14.08□□□□□ -0.16
SQSTM1-211ENST00000506690 ZNF503Q96F45 646 aa14.08□□□□□ -0.16
SQSTM1-211ENST00000506690 TCF19Q9Y242 345 aa14.08□□□□□ -0.16
SQSTM1-211ENST00000506690 GGTLC3B5MD39 225 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 M0R2Z0 102 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 PLGLB1Q02325 96 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 NEUROG1Q92886 237 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 COMMD5Q9GZQ3 224 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 WNT9BO14905 357 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 ACTL6BO94805 426 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 IGFBP2P18065 325 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 ALKBH6Q3KRA9 238 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 ALKBH2Q6NS38 261 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 MDP1Q86V88 176 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 RFESDQ8TAC1 157 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 TNFRSF19Q9NS68 423 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 SERTAD4Q9NUC0 356 aa14.07□□□□□ -0.16
SQSTM1-211ENST00000506690 CA1P00915 261 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 GPR12P47775 334 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 CYB561P49447 251 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 SPATA12Q7Z6I5 190 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 CST9LQ9H4G1 147 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 J3QW42 95 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 TAX1BP3O14907 124 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 CELA3AP09093 270 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 MGST1P10620 155 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 GABRA6Q16445 453 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 GDF5OSQ5U4N7 250 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 SMIM15Q7Z3B0 74 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 TPRX1Q8N7U7 411 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 MAFAQ8NHW3 353 aaPredicted RBP14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 PRR7Q8TB68 274 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 FAM168AQ92567 244 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 SAP30LQ9HAJ7 183 aa14.06□□□□□ -0.16
SQSTM1-211ENST00000506690 C15orf65H3BRN8 121 aa14.05□□□□□ -0.16
SQSTM1-211ENST00000506690 CCL4P13236 92 aa14.05□□□□□ -0.16
SQSTM1-211ENST00000506690 NPY1RP25929 384 aa14.05□□□□□ -0.16
SQSTM1-211ENST00000506690 ERVK-16P61578 105 aa14.05□□□□□ -0.16
SQSTM1-211ENST00000506690 HOXA4Q00056 320 aaPredicted RBP14.05□□□□□ -0.16
SQSTM1-211ENST00000506690 OCIAD2Q56VL3 154 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms