RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SSX6Q7RTT6 188 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 PRSS48Q7RTY5 328 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 GPR141Q7Z602 305 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 PPP1R27Q86WC6 154 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 CLVS1Q8IUQ0 354 aaPredicted RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 RGP1Q92546 391 aaPredicted RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 ARPC1AQ92747 370 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SMIM19Q96E16 107 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 C4orf36Q96KX1 117 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 CMTM3Q96MX0 182 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SPIN2AQ99865 258 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SPIN2BQ9BPZ2 258 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 HSPB9Q9BQS6 159 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 SRSF8Q9BRL6 282 aaKnown RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 FUNDC2Q9BWH2 189 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 TTTY10Q9BZA0 68 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 MFFQ9GZY8 342 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 PPIL3Q9H2H8 161 aaKnown RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 RNF167Q9H6Y7 350 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 TAF9BQ9HBM6 251 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 FGF20Q9NP95 211 aaPredicted RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 CNOT2Q9NZN8 540 aaKnown RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 PEF1Q9UBV8 284 aaKnown RBP2.89□□□□□ -1.95
USP54-217ENST00000498213 TPRKBQ9Y3C4 175 aa2.89□□□□□ -1.95
USP54-217ENST00000498213 TNCP24821 2201 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 IGHV4-4A0A075B6R2 117 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 A0A087WW49 117 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 TRBV5-5A0A0J9YX44 114 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 A0A1W2PN81 502 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 EFCAB10A6NFE3 127 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 A8MWP6 167 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 E9PI62 339 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 H3BMQ9 156 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 GEMIN2O14893 280 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 MAGEB4O15481 346 aaPredicted RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 CYB5BO43169 146 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 MRPS14O60783 128 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 GABARAPO95166 117 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 CD37P11049 281 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 HIST1H1BP16401 226 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 IGFBP3P17936 291 aaPredicted RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 GADD45AP24522 165 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 PSMA1P25786 263 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 PSMB9P28065 219 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 BLVRBP30043 206 aaPredicted RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 MAS1LP35410 378 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 CHRNA7P36544 502 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 PSMD7P51665 324 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 APOC4P55056 127 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 TPPP2P59282 170 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 NCS1P62166 190 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 SPCS2Q15005 226 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 PLGLAQ15195 96 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 MSMO1Q15800 293 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 RPEL1Q2QD12 228 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 Q499Y3 187 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 TP53I3Q53FA7 332 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 TMEM41BQ5BJD5 291 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 ATAD3CQ5T2N8 411 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 ADAMTSL4-AS1Q5T5F5 129 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 DDI2Q5TDH0 399 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 THOC7Q6I9Y2 204 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 RAB12Q6IQ22 244 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 UNQ5815/PRO19632Q6UWF5 114 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 HSD17B13Q7Z5P4 300 aaPredicted RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 LHFPL3Q86UP9 236 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 GPHB5Q86YW7 130 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 MS4A15Q8N5U1 240 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 ZFP41Q8N8Y5 198 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 NECAP1Q8NC96 275 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 OR5D18Q8NGL1 313 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 RFESDQ8TAC1 157 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 KCNG3Q8TAE7 436 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 VSTM2AQ8TAG5 236 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 PLPPR1Q8TBJ4 325 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 NEK7Q8TDX7 302 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 TMEM80Q96HE8 168 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 NEDD4LQ96PU5 975 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 TBX5Q99593 518 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 VGLL1Q99990 258 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 AGMATQ9BSE5 352 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 URM1Q9BTM9 101 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 TM2D1Q9BX74 207 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 KRTAP4-3Q9BYR4 195 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 C6orf62Q9GZU0 229 aaPredicted RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 FAM192AQ9GZU8 254 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 OR51E2Q9H255 320 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 IFI27L2Q9H2X8 130 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 ISG20L2Q9H9L3 353 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 GNB4Q9HAV0 340 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 CHMP1AQ9HD42 196 aaPredicted RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 PARP11Q9NR21 331 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 BABAM2Q9NXR7 383 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 SCN3BQ9NY72 215 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 BLOC1S6Q9UL45 172 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 DIMT1Q9UNQ2 313 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 EXOSC1Q9Y3B2 195 aaKnown RBP2.88□□□□□ -1.95
USP54-217ENST00000498213 PYGO1Q9Y3Y4 419 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 FAT4Q6V0I7 4981 aa2.88□□□□□ -1.95
USP54-217ENST00000498213 IGLV7-46A0A075B6I9 117 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms