RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CADM3Q8N126 398 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 DEFB125Q8N687 156 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 LY6G5BQ8NDX9 201 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 R3HDMLQ9H3Y0 253 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 JPT1Q9UK76 154 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 TRAV25A0A0B4J276 109 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 B9A039 149 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 ETV2O00321 342 aaPredicted RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 KLK15Q9H2R5 256 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 J3QT63 122 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 COX7A2LO14548 114 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 DEFB121Q5J5C9 76 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 ZIC4Q8N9L1 334 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 MRPL36Q9P0J6 103 aaKnown RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 DICER1Q9UPY3 1922 aaKnown RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 KMT2EQ8IZD2 1858 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 OTPQ5XKR4 325 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 CLDN19Q8N6F1 224 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 ST6GALNAC2Q9UJ37 374 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 ETDCA0A1B0GVM5 59 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 C10orf105Q8TEF2 133 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 OSTCQ9NRP0 149 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 NEU3Q9UQ49 428 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 MTCH2Q9Y6C9 303 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 ABCC6O95255 1503 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 FGF12P61328 243 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 PCLAFQ15004 111 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 C17orf99Q6UX52 265 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 GYPBP06028 91 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 HLA-DRB4P13762 266 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 TPTE2P1Q5T6R2 138 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 SPRYD7Q5W111 196 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 LINC00305Q7Z4B0 112 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 CLECL1Q8IZS7 167 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 ZNF645Q8N7E2 425 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 HLA-DRB4X5D2U9 266 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 CACNA1EQ15878 2313 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 LIPT2A6NK58 231 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 TMEM233B4DJY2 109 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 FCMRO60667 390 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 TIMP3P35625 211 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 RUNX1Q01196 453 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 RPS26P11Q5JNZ5 115 aaPredicted RBP4.98□□□□□ -1.61
USF3-204ENST00000496826 B9D2Q9BPU9 175 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 MRM2Q9UI43 246 aaKnown RBP4.98□□□□□ -1.61
USF3-204ENST00000496826 LRRC7Q96NW7 1537 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 CDIPTO14735 213 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 EML2O95834 649 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 RPL23P62829 140 aaKnown RBP4.98□□□□□ -1.61
USF3-204ENST00000496826 CEACAM16Q2WEN9 425 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 U3KQE9 123 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 LOC105371267A0A1B0GV96 52 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 H3BQ15 152 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 EPPINO95925 133 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 SPINK8P0C7L1 97 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 KISS1Q15726 138 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 CCSMST1Q4G0I0 132 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 GDF15Q99988 308 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 PDFQ9HBH1 243 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 C5AR2Q9P296 337 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 RNF115Q9Y4L5 304 aa4.98□□□□□ -1.61
USF3-204ENST00000496826 CCL1P22362 96 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 DEFB110Q30KQ9 67 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 AWAT1Q58HT5 328 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 LCN12Q6JVE5 192 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 UBE2D4Q9Y2X8 147 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 LMTK2Q8IWU2 1503 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 ARHGAP32A7KAX9 2087 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 A0A1W2PRE2 83 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 WNT10BO00744 389 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 CD7P09564 240 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 PVRIGQ6DKI7 326 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 MRPL14Q6P1L8 145 aaKnown RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 GDF7Q7Z4P5 450 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 RNF138Q8WVD3 245 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 ALPK2Q86TB3 2170 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 H3BP45 60 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 UPK3BQ9BT76 320 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 ZFP64Q9NPA5 681 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 CSDC2Q9Y534 153 aaKnown RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 COL1A1P02452 1464 aaPredicted RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 A0A096LPE4 126 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 MBD3L4A6NDZ8 208 aaPredicted RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 MBD3L3A6NE82 208 aaPredicted RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 MBD3L5A6NJ08 208 aaPredicted RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 MPC2O95563 127 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 IGKV4-1P06312 121 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 VEGFBP49765 207 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 FXYD7P58549 80 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 C8orf82Q6P1X6 216 aaPredicted RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 SERP2Q8N6R1 65 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 MBD3L2Q8NHZ7 208 aaPredicted RBP4.97□□□□□ -1.61
USF3-204ENST00000496826 MYEOVQ96EZ4 313 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 Q9H3A6 140 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 LRP12Q9Y561 859 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 A0A0B4J2E0 115 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 A0A1B0GX12 115 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 GAGE12BA1L429 117 aa4.97□□□□□ -1.61
USF3-204ENST00000496826 IGHV2-70P01814 119 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms