RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MAJINQ3KP22 176 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 CUL9Q8IWT3 2517 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 A0A1W2PN81 502 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 NPSP0C0P6 89 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 CRYGSP22914 178 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 CSN1S1P47710 185 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 ZNF645Q8N7E2 425 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 OR1L4Q8NGR5 311 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 CALYQ9NYX4 217 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 P01737 135 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 HIST1H1EP10412 219 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 SPSB3Q6PJ21 355 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 ST6GALNAC6Q969X2 333 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 IGKV1-12A0A0C4DH73 117 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 IGKV1D-12P01611 117 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 LINC00614P0C842 121 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 ABHD17AQ96GS6 310 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 PRDM13Q9H4Q3 707 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 SPRR3Q9UBC9 169 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 TIMM9Q9Y5J7 89 aa13.73□□□□□ -0.21
CCDC88B-209ENST00000494080 VKORC1L1Q8N0U8 176 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 DCTN5Q9BTE1 182 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 SSBP3Q9BWW4 388 aaPredicted RBP13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 NRN1Q9NPD7 142 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 LEPROTL1O95214 131 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 PDPNQ86YL7 162 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 OR8B3Q8NGG8 313 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 MBD3L1Q8WWY6 194 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 ZDHHC16Q969W1 377 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 SPG11Q96JI7 2443 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 SCO2A0A1W2PP80 73 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 COL8A1P27658 744 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 DNLZQ5SXM8 178 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 OR8A1Q8NGG7 326 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 IL36BQ9NZH7 164 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 PRNDQ9UKY0 176 aa13.72□□□□□ -0.21
CCDC88B-209ENST00000494080 IGHV3-21A0A0B4J1V1 117 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 LY6G6EA0A0G2JKS1 128 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 C12orf77C9JDV5 145 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 CD55P08174 381 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 SPSB4Q96A44 273 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 OR8B2Q96RD0 313 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 U3KQA8 63 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 TNFSF13O75888 250 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 HGFACQ04756 655 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 SRSF6Q13247 344 aaKnown RBP13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 ACSF3Q4G176 576 aaPredicted RBP13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 PET117Q6UWS5 81 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 LPAR2Q9HBW0 351 aa13.71□□□□□ -0.21
CCDC88B-209ENST00000494080 ZNF207O43670 478 aaKnown RBP13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 AMY1AP04745 511 aa13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 CFPP27918 469 aa13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 TDGF1P3P51864 188 aa13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 GFRA1P56159 465 aa13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 ZNF714Q96N38 554 aa13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 PNRC2Q9NPJ4 139 aaKnown RBP13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 HSPB8Q9UJY1 196 aa13.71□□□□□ -0.22
CCDC88B-209ENST00000494080 NUDT3O95989 172 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 TFF1P04155 84 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 CENPWQ5EE01 88 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 FAM90A2PQ658T7 463 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 ABHD12Q8N2K0 398 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 UBTD1Q9HAC8 227 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 A0A1B0GWJ7 208 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 GFRA3O60609 400 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 COMPP49747 757 aaPredicted RBP13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 TEX38Q6PEX7 206 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 SFXN3Q9BWM7 321 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 PLXNB3Q9ULL4 1909 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 TRBV9A0A0B4J1U6 114 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 TRAV1-1A0A0B4J248 108 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 J3QW42 95 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 TIMM23BQ5SRD1 257 aa13.7□□□□□ -0.22
CCDC88B-209ENST00000494080 CEACAM18A8MTB9 384 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 GLRXP35754 106 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 LDLRAD2Q5SZI1 272 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 IGHV2OR16-5A0A0B4J2B6 119 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 GCHFRP30047 84 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 CEACAM3P40198 252 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 RAB37Q96AX2 223 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 OR51B2Q9Y5P1 312 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 IGKV1-27A0A075B6S5 117 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 PLP1P60201 277 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 UNQ6494/PRO21346Q6UXR6 183 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 OR1B1Q8NGR6 318 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 OR1L8Q8NGR8 309 aa13.69□□□□□ -0.22
CCDC88B-209ENST00000494080 CA2P00918 260 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 LYZP61626 148 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 UCNP55089 124 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 ACP7Q6ZNF0 438 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 RPP25LQ8N5L8 163 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 CORTO00230 105 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 MAS1LP35410 378 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 IGKV3D-15A0A087WSY6 115 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 RND2P52198 227 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 FOXA3P55318 350 aaPredicted RBP13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 FOXF2Q12947 444 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 NIT1Q86X76 327 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 ZNF581Q9P0T4 197 aa13.68□□□□□ -0.22
CCDC88B-209ENST00000494080 AMMECR1Q9Y4X0 333 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms