RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HIST1H3AP68431 136 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 RPL19P84098 196 aaKnown RBP2.75□□□□□ -1.97
VPS13A-212ENST00000493341 H3F3AP84243 136 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 BIKQ13323 160 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 KRR1Q13601 381 aaKnown RBP2.75□□□□□ -1.97
VPS13A-212ENST00000493341 TMEM42Q69YG0 159 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 LPCAT3Q6P1A2 487 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 SPINT4Q6UDR6 99 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 SCXQ7RTU7 201 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 CD200R1Q8TD46 325 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 LMX1AQ8TE12 382 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 BORCS7Q96B45 105 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 HHLA2Q9UM44 414 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 ANGPT4Q9Y264 503 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 V9GYQ6 96 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 DSCAML1Q8TD84 2053 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 LAMB4A4D0S4 1761 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 BCORQ6W2J9 1755 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 SCN7AQ01118 1682 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 KDM3BQ7LBC6 1761 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 ARFGEF2Q9Y6D5 1785 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 IGSF23A1L1A6 192 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 KNCNA6PVL3 124 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 IGHV3-53P01767 116 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 CD5P06127 495 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 CRYBB3P26998 211 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 MOBPQ13875 183 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 GLT6D1Q7Z4J2 308 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 OR5P3Q8WZ94 311 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 MGLLQ99685 303 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 GPR84Q9NQS5 396 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 C14orf105Q9NVL8 296 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 IDI2-AS1Q9NZ38 188 aa2.75□□□□□ -1.97
VPS13A-212ENST00000493341 AFDNP55196 1824 aaKnown RBP2.74□□□□□ -1.97
VPS13A-212ENST00000493341 KCPQ6ZWJ8 1503 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 ARID1AO14497 2285 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 IGKV1D-37A0A075B6S9 117 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 SERPINA7P05543 415 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 TSPEAR-AS2P59090 65 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 LINC00315P59091 139 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 DHRS4L2Q6PKH6 230 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 AMTNQ6UX39 209 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 TMEM136Q6ZRR5 245 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 TMED4Q7Z7H5 227 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 HMGN2P46Q86SG4 172 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 RPRMLQ8N4K4 120 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 ZNF676Q8N7Q3 588 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 DAND5Q8N907 189 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 ZNF680Q8NEM1 530 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 OR11H1Q8NG94 326 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 OR10A6Q8NH74 314 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 PRRT1Q99946 306 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 VPREB3Q9UKI3 123 aa2.74□□□□□ -1.97
VPS13A-212ENST00000493341 ZNF443Q9Y2A4 671 aaPredicted RBP2.74□□□□□ -1.97
VPS13A-212ENST00000493341 IGKV6D-41A0A0C4DH26 115 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 FAAHO00519 579 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 UBE2L6O14933 153 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 FABP1P07148 127 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 HOXC5Q00444 222 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 KCNJ8Q15842 424 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 SLC22A24Q8N4F4 322 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 RPS4Y2Q8TD47 263 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 NEK7Q8TDX7 302 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 RNASE6Q93091 150 aaKnown RBP2.73□□□□□ -1.97
VPS13A-212ENST00000493341 NMNAT3Q96T66 252 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 NKX6-2Q9C056 277 aaPredicted RBP2.73□□□□□ -1.97
VPS13A-212ENST00000493341 ATAD5Q96QE3 1844 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 IGLV2-18A0A075B6J9 118 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 LST1O00453 97 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 OR2B3O76000 313 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 OR7C1O76099 320 aaPredicted RBP2.73□□□□□ -1.97
VPS13A-212ENST00000493341 HLA-DRB1P01911 266 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 SERPINB10P48595 397 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 SNRPD2P62316 118 aaKnown RBP2.73□□□□□ -1.97
VPS13A-212ENST00000493341 TNFAIP6P98066 277 aaPredicted RBP2.73□□□□□ -1.97
VPS13A-212ENST00000493341 GNA12Q03113 381 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 CAV1Q03135 178 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 SNCBQ16143 134 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 DNLZQ5SXM8 178 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 GPHB5Q86YW7 130 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 ANKRD29Q8N6D5 301 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 OR51A2Q8NGJ7 313 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 OR4X1Q8NH49 305 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 MCFD2Q8NI22 146 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 RAD51AP1Q96B01 352 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 OPTCQ9UBM4 332 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 AK3Q9UIJ7 227 aa2.73□□□□□ -1.97
VPS13A-212ENST00000493341 DICER1Q9UPY3 1922 aaKnown RBP2.72□□□□□ -1.97
VPS13A-212ENST00000493341 SBF1O95248 1867 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 ANKRD31Q8N7Z5 1873 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 N4BP2Q86UW6 1770 aaPredicted RBP2.72□□□□□ -1.97
VPS13A-212ENST00000493341 FAM159BA6NKW6 160 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 A8MUN3 132 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 PGRMC1O00264 195 aaKnown RBP2.72□□□□□ -1.97
VPS13A-212ENST00000493341 PDE6DO43924 150 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 KCNE1P15382 129 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 SLC25A16P16260 332 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 NPPCP23582 126 aa2.72□□□□□ -1.97
VPS13A-212ENST00000493341 ZNF140P52738 457 aaPredicted RBP2.72□□□□□ -1.97
VPS13A-212ENST00000493341 RPS20P60866 119 aaKnown RBP2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms