RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 KIF15Q9NS87 1388 aa0.77□□□□□ -2.29
PTPN4-212ENST00000488896 CCDC88AQ3V6T2 1871 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 ABCC11Q96J66 1382 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 IGHV1-18A0A0C4DH31 117 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 EEF1E1-BLOC1S5C9J1V9 151 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 GOLGA6L19H0YKK7 550 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 M0R036 132 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 SLC22A1O15245 554 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 CIAO1O76071 339 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 RPS17P08708 135 aaKnown RBP0.76□□□□□ -2.29
PTPN4-212ENST00000488896 SRP19P09132 144 aaKnown RBP0.76□□□□□ -2.29
PTPN4-212ENST00000488896 LGALS1P09382 135 aaKnown RBP0.76□□□□□ -2.29
PTPN4-212ENST00000488896 SULT1A3P0DMM9 295 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 SULT1A4P0DMN0 295 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 FGF6P10767 208 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 MYL12AP19105 171 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 MYL6P60660 151 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 SPCS3P61009 180 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 FKBP1AP62942 108 aaKnown RBP0.76□□□□□ -2.29
PTPN4-212ENST00000488896 EMX1Q04741 257 aaPredicted RBP0.76□□□□□ -2.29
PTPN4-212ENST00000488896 KCNJ8Q15842 424 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 ACSM3Q53FZ2 586 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 CD200R1LQ6Q8B3 271 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 UNQ6190/PRO20217Q6UXQ8 127 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 RPP25LQ8N5L8 163 aaKnown RBP0.76□□□□□ -2.29
PTPN4-212ENST00000488896 ANKRD7Q92527 254 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 CISHQ9NSE2 258 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 AK3Q9UIJ7 227 aa0.76□□□□□ -2.29
PTPN4-212ENST00000488896 BRWD1Q9NSI6 2320 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 TRAV7A0A075B6U4 112 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 A0A1B0GV50 99 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 DISC1C4P0D8 188 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 INMT-MINDY4F8WBC2 141 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 LST1O00453 97 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 NOS1APO75052 506 aaPredicted RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 RPP14O95059 124 aaKnown RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 CRYZL1O95825 349 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 PRM2P04554 102 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 SERPINA7P05543 415 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 HIST1H1EP10412 219 aaKnown RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 CCL5P13501 91 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 PSMB8P28062 276 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 AKR1C3P42330 323 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 MARCKSL1P49006 195 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 NKX2-5P52952 324 aaPredicted RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 CEBPGP53567 150 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 MAGOHP61326 146 aaKnown RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 HIST1H4AP62805 103 aaKnown RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 HBA1P69905 142 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 CAV1Q03135 178 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 RPL18Q07020 188 aaKnown RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 AESQ08117 197 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 MOGQ16653 247 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 SFXN4Q6P4A7 337 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 FP248Q71RG6 208 aaPredicted RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 ZNF550Q7Z398 422 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 MED12LQ86YW9 2145 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 LINC00471Q8N535 108 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 C15orf53Q8NAA6 179 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 MNS1Q8NEH6 495 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 OR1M1Q8NGA1 313 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 OR8B3Q8NGG8 313 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 ITFG2Q969R8 447 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 TMEM106AQ96A25 262 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 ROPN1LQ96C74 230 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 IMP4Q96G21 291 aaKnown RBP0.75□□□□□ -2.29
PTPN4-212ENST00000488896 DCUN1D1Q96GG9 259 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 EFCAB1Q9HAE3 211 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 VPS29Q9UBQ0 182 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 FUT9Q9Y231 359 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 MICAL3Q7RTP6 2002 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 FBN2P35556 2912 aa0.75□□□□□ -2.29
PTPN4-212ENST00000488896 DIDO1Q9BTC0 2240 aaKnown RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 RP1P56715 2156 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 ARFGEF3Q5TH69 2177 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 IGKV3D-7A0A0C4DH55 119 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 IGKV3OR2-268A0A0C4DH90 116 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 A0A0D9SEW6 157 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 A0A1B0GW54 56 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 FABP5P3A8MUU1 101 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 PSMD12O00232 456 aaPredicted RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 SDCBPO00560 298 aaPredicted RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 CD79AP11912 226 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 RPS4Y1P22090 263 aaKnown RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 SULT1A1P50225 295 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 DEFA3P59666 94 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 TNFAIP6P98066 277 aaPredicted RBP0.74□□□□□ -2.29
PTPN4-212ENST00000488896 SPA17Q15506 151 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 Q1T7F1 81 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 AADACL3Q5VUY0 350 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 SPOPLQ6IQ16 392 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 FAM173BQ6P4H8 233 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 DPPA3Q6W0C5 159 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 C7orf65Q6ZTY9 151 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 AAED1Q7RTV5 226 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 TMEM86AQ8N2M4 240 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 C9orf163Q8N9P6 203 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 GPR32P1Q8NGA4 272 aa0.74□□□□□ -2.29
PTPN4-212ENST00000488896 C8orf76Q96K31 380 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms