RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GATA4P43694 442 aa14.7□□□□□ -0.06
VIM-206ENST00000487938 CNN1P51911 297 aaKnown RBP14.7□□□□□ -0.06
VIM-206ENST00000487938 RPL31P62899 125 aaKnown RBP14.7□□□□□ -0.06
VIM-206ENST00000487938 C1orf185Q5T7R7 199 aa14.7□□□□□ -0.06
VIM-206ENST00000487938 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.7□□□□□ -0.06
VIM-206ENST00000487938 IL19Q9UHD0 177 aa14.7□□□□□ -0.06
VIM-206ENST00000487938 TSTD3H0UI37 97 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 CT45A6P0DMU7 189 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 CT45A5P0DMU8 189 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 CT45A7P0DMV0 189 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 DDTP30046 118 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 SELENOVP59797 346 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 FOXL1Q12952 345 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 MIR17HGQ75NE6 70 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 LRFN3Q9BTN0 628 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 RAB9BQ9NP90 201 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 ELOVL5Q9NYP7 299 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 TANC2Q9HCD6 1990 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 RPL29P47914 159 aaKnown RBP14.69□□□□□ -0.06
VIM-206ENST00000487938 RAB31Q13636 194 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 MLANAQ16655 118 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 RND1Q92730 232 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 TXNDC17Q9BRA2 123 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 NCOR1P1Q9H4R4 102 aa14.69□□□□□ -0.06
VIM-206ENST00000487938 RP1L1Q8IWN7 2480 aaPredicted RBP14.69□□□□□ -0.06
VIM-206ENST00000487938 PLCE1Q9P212 2302 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 A0A087X0M5 115 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 A0A1B0GX30 115 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 GATA2P23769 480 aaPredicted RBP14.68□□□□□ -0.06
VIM-206ENST00000487938 CCL8P80075 99 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 HLA-DRB5Q30154 266 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 LINC00469Q8N7U9 141 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 OR10G8Q8NGN5 311 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 TP53TG5Q9Y2B4 290 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 TNCP24821 2201 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 K7EN84 100 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 SLC17A3O00476 420 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 LINC00869P0C866 280 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 TIMP3P35625 211 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 TEX38Q6PEX7 206 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 ZNF788Q6ZQV5 615 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 ZCCHC24Q8N2G6 241 aaKnown RBP14.68□□□□□ -0.06
VIM-206ENST00000487938 NEUROG1Q92886 237 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 ADTRPQ96IZ2 230 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 IMMP2LQ96T52 175 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 PLEKHA3Q9HB20 300 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 SLC35D1Q9NTN3 355 aa14.68□□□□□ -0.06
VIM-206ENST00000487938 DYSFO75923 2080 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 NDUFB7P17568 137 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 PRR20EP86478 221 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 PRR20CP86479 221 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 PRR20DP86480 221 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 PRR20BP86481 221 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 PRR20AP86496 221 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 MRPL41Q8IXM3 137 aaKnown RBP14.67□□□□□ -0.06
VIM-206ENST00000487938 TMEM256Q8N2U0 113 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 TEX50A0A1B0GTY4 177 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 UPK2O00526 184 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 CD40P25942 277 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 ZNF664Q8N3J9 261 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 TMEM18Q96B42 140 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 PRNDQ9UKY0 176 aa14.67□□□□□ -0.06
VIM-206ENST00000487938 NUPR1O60356 82 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 TCF15Q12870 199 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 IGFL3Q6UXB1 125 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 Q6ZS92 163 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 IGKV1OR2-108A0A075B7D4 117 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 MT-CO2P00403 227 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 IRF2P14316 349 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 TNFSF4P23510 183 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 PSG5Q15238 335 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 SLC25A48Q6ZT89 311 aaKnown RBP14.66□□□□□ -0.06
VIM-206ENST00000487938 OR10W1Q8NGF6 305 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 NABP2Q9BQ15 211 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 RPUSD1Q9UJJ7 312 aaKnown RBP14.66□□□□□ -0.06
VIM-206ENST00000487938 SLC45A2Q9UMX9 530 aa14.66□□□□□ -0.06
VIM-206ENST00000487938 ADMP35318 185 aa14.65□□□□□ -0.06
VIM-206ENST00000487938 PRCDQ00LT1 54 aa14.65□□□□□ -0.06
VIM-206ENST00000487938 POU2AF1Q16633 256 aa14.65□□□□□ -0.06
VIM-206ENST00000487938 C3orf36Q3SXR2 165 aa14.65□□□□□ -0.06
VIM-206ENST00000487938 REC114Q7Z4M0 266 aa14.65□□□□□ -0.06
VIM-206ENST00000487938 GBGT1Q8N5D6 347 aa14.65□□□□□ -0.06
VIM-206ENST00000487938 A8MXE2 369 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 GCGP01275 180 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 OR4A8P0C604 315 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 ZNF90Q03938 601 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 OR5I1Q13606 314 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 RTL8BQ17RB0 113 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 RBMXL3Q8N7X1 1067 aaKnown RBP14.64□□□□□ -0.07
VIM-206ENST00000487938 UHRF2Q96PU4 802 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 OR10J1P30954 320 aa14.64□□□□□ -0.07
VIM-206ENST00000487938 GRIFINA4D1Z8 144 aa14.63□□□□□ -0.07
VIM-206ENST00000487938 SAA1P0DJI8 122 aaPredicted RBP14.63□□□□□ -0.07
VIM-206ENST00000487938 CORO2AQ92828 525 aa14.63□□□□□ -0.07
VIM-206ENST00000487938 SFXN3Q9BWM7 321 aa14.63□□□□□ -0.07
VIM-206ENST00000487938 hADV38S2A0JD32 116 aa14.63□□□□□ -0.07
VIM-206ENST00000487938 TM4SF5O14894 197 aa14.63□□□□□ -0.07
VIM-206ENST00000487938 FRMD6-AS1P0C7T7 363 aa14.63□□□□□ -0.07
VIM-206ENST00000487938 CCL3L1P16619 93 aa14.63□□□□□ -0.07
VIM-206ENST00000487938 CBLN1P23435 193 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms