RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 MLLT11Q13015 90 aaPredicted RBP11.16□□□□□ -0.62
MCF2L-228ENST00000487354 TRAM1Q15629 374 aa11.16□□□□□ -0.62
MCF2L-228ENST00000487354 FAM90A2PQ658T7 463 aa11.16□□□□□ -0.62
MCF2L-228ENST00000487354 CNIH2Q6PI25 160 aa11.16□□□□□ -0.62
MCF2L-228ENST00000487354 NUDCD2Q8WVJ2 157 aa11.16□□□□□ -0.62
MCF2L-228ENST00000487354 SRSF8Q9BRL6 282 aaKnown RBP11.16□□□□□ -0.62
MCF2L-228ENST00000487354 C20orf24Q9BUV8 137 aa11.16□□□□□ -0.62
MCF2L-228ENST00000487354 SMPXQ9UHP9 88 aa11.16□□□□□ -0.62
MCF2L-228ENST00000487354 C15orf62A8K5M9 175 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 K7EIM0 57 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 RBFOX2O43251 390 aaKnown RBP eCLIP11.15□□□□□ -0.62
MCF2L-228ENST00000487354 GIG44P09565 113 aaPredicted RBP11.15□□□□□ -0.62
MCF2L-228ENST00000487354 CTXN2P0C2S0 81 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 HSMCR30P0CW71 290 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 RBMY1A1P0DJD3 496 aaKnown RBP11.15□□□□□ -0.62
MCF2L-228ENST00000487354 RBMY1CP0DJD4 496 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 RBMY1FQ15415 496 aaKnown RBP11.15□□□□□ -0.62
MCF2L-228ENST00000487354 CDNFQ49AH0 187 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 OGFRL1Q5TC84 451 aaPredicted RBP11.15□□□□□ -0.62
MCF2L-228ENST00000487354 HACD4Q5VWC8 232 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 SPSB3Q6PJ21 355 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 SCARB1Q8WTV0 552 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 QTRT1Q9BXR0 403 aaKnown RBP11.15□□□□□ -0.62
MCF2L-228ENST00000487354 C6orf62Q9GZU0 229 aaPredicted RBP11.15□□□□□ -0.62
MCF2L-228ENST00000487354 DCSTAMPQ9H295 470 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 HRH4Q9H3N8 390 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 HRASLSQ9HDD0 168 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 CCL28Q9NRJ3 127 aa11.15□□□□□ -0.62
MCF2L-228ENST00000487354 IGHV7-4-1A0A0J9YVY3 117 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 TMEM235A6NFC5 223 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 CA1P00915 261 aaPredicted RBP11.14□□□□□ -0.63
MCF2L-228ENST00000487354 SERPINE2P07093 398 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 FGF2P09038 288 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 PTHLHP12272 177 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 TFPI2P48307 235 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 TAS2R31P59538 309 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 SPAG16Q8N0X2 631 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 ATP6V0BQ99437 205 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 RHPN1-AS1Q9BWJ2 59 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 DUSP21Q9H596 190 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 TMEM140Q9NV12 185 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 C21orf62Q9NYP8 219 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 THYN1Q9P016 225 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 ANXA10Q9UJ72 324 aa11.14□□□□□ -0.63
MCF2L-228ENST00000487354 IGHV4-4A0A075B6R2 117 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 IGHV3-49A0A0A0MS15 119 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 TRAV1-2A0A0B4J238 106 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 PRSS29PA6NIE9 313 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 C11orf94C9JXX5 98 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 SULT1C2O00338 296 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 CTSGP08311 255 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 OR13C7P0DN81 318 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 MSMO1Q15800 293 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 Q6ZTC4 211 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 OR10C1Q96KK4 312 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 ATG5Q9H1Y0 275 aa11.13□□□□□ -0.63
MCF2L-228ENST00000487354 F11RQ9Y624 299 aaKnown RBP11.13□□□□□ -0.63
MCF2L-228ENST00000487354 LRP1BQ9NZR2 4599 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 IGHV4-28A0A0C4DH34 117 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 TEX50A0A1B0GTY4 177 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 METTL21EPA6NDL7 271 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 C15orf61A6NNL5 157 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 HLA-DMBP28068 263 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 RANBP1P43487 201 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 TMEM187Q14656 261 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 FAM24BQ8N5W8 94 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 TMEM116Q8NCL8 245 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 MGLLQ99685 303 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 COMMD5Q9GZQ3 224 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 ACOT13Q9NPJ3 140 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 NDUFA4L2Q9NRX3 87 aa11.12□□□□□ -0.63
MCF2L-228ENST00000487354 IGKV3-7A0A075B6H7 116 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 ELOA3CA0A087WX78 387 aaPredicted RBP11.11□□□□□ -0.63
MCF2L-228ENST00000487354 CASQ2O14958 399 aaPredicted RBP11.11□□□□□ -0.63
MCF2L-228ENST00000487354 HPRT1P00492 218 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 NQO2P16083 231 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 RCN1Q15293 331 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 SLC25A24Q6NUK1 477 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 LILRB2Q8N423 598 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 GBGT1Q8N5D6 347 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 OR13F1Q8NGS4 319 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 SECTM1Q8WVN6 248 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 X6R8D5 127 aa11.11□□□□□ -0.63
MCF2L-228ENST00000487354 IGHV3OR16-13A0A075B7E8 117 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 IGHV3-74A0A0B4J1X5 117 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 SMIM30A4D0T7 59 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 PDCD5O14737 125 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 TRAPPC2P0DI81 140 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 TRAPPC2BP0DI82 140 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 ARL6IP1Q15041 203 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 LEMD1Q68G75 181 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 THOC7Q6I9Y2 204 aaKnown RBP11.1□□□□□ -0.63
MCF2L-228ENST00000487354 UBAC2Q8NBM4 344 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 SCRT1Q9BWW7 348 aa11.1□□□□□ -0.63
MCF2L-228ENST00000487354 ERICH4A6NGS2 130 aa11.09□□□□□ -0.63
MCF2L-228ENST00000487354 ZNF705EA8MWA4 302 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-228ENST00000487354 NUPL2O15504 423 aaKnown RBP11.09□□□□□ -0.63
MCF2L-228ENST00000487354 MRPS14O60783 128 aaKnown RBP11.09□□□□□ -0.63
MCF2L-228ENST00000487354 PPYP01298 95 aa11.09□□□□□ -0.63
MCF2L-228ENST00000487354 AMBPP02760 352 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms