RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 IL18BPO95998 194 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 TFF1P04155 84 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 RPL27AP46776 148 aaKnown RBP9.27□□□□□ -0.93
HDAC6-228ENST00000486227 HINT1P49773 126 aaPredicted RBP9.27□□□□□ -0.93
HDAC6-228ENST00000486227 RPL39P5Q59GN2 51 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 FA2HQ7L5A8 372 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 WDFY1Q8IWB7 410 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 LSM10Q969L4 123 aaKnown RBP9.27□□□□□ -0.93
HDAC6-228ENST00000486227 ASCL3Q9NQ33 180 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 WNK2Q9Y3S1 2297 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 SNRPCP09234 159 aaKnown RBP9.27□□□□□ -0.93
HDAC6-228ENST00000486227 CFPP27918 469 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 ZCCHC24Q8N2G6 241 aaKnown RBP9.27□□□□□ -0.93
HDAC6-228ENST00000486227 OR9G1Q8NH87 305 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 PARD6GQ9BYG4 376 aaPredicted RBP9.27□□□□□ -0.93
HDAC6-228ENST00000486227 WFDC1Q9HC57 220 aa9.27□□□□□ -0.93
HDAC6-228ENST00000486227 NUP210Q8TEM1 1887 aaPredicted RBP9.26□□□□□ -0.93
HDAC6-228ENST00000486227 IGKV1-27A0A075B6S5 117 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 SERTM2A0A1B0GWG4 89 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 SLC25A17O43808 307 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 APCSP02743 223 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 SMIM17P0DL12 118 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 UCP1P25874 307 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 KIR2DL2P43627 348 aaPredicted RBP9.26□□□□□ -0.93
HDAC6-228ENST00000486227 CAMPP49913 170 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 RPL8P62917 257 aaKnown RBP9.26□□□□□ -0.93
HDAC6-228ENST00000486227 CCL20P78556 96 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 WDR31Q8NA23 367 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 IGKV1D-13A0A0B4J2D9 117 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 MPDU1O75352 247 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 IGKV1-13P0DP09 117 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 HSPE1P61604 102 aaKnown RBP9.26□□□□□ -0.93
HDAC6-228ENST00000486227 HCP5Q6MZN7 132 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 OR8I2Q8N0Y5 310 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 ABHD12Q8N2K0 398 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 WASHC3Q9Y3C0 194 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 TEX50A0A1B0GTY4 177 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 TIMP3P35625 211 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 PCSK4Q6UW60 755 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 DNM1P46Q6ZS02 220 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 C18orf12Q96KH6 178 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 CLEC7AQ9BXN2 247 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 PXMP4Q9Y6I8 212 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 TGFAP01135 160 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 AMBPP02760 352 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 TMEM30BQ3MIR4 351 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 RNFT1Q5M7Z0 435 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 PDPNQ86YL7 162 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 RNF2Q99496 336 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 MIEN1Q9BRT3 115 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 TCF19Q9Y242 345 aa9.26□□□□□ -0.93
HDAC6-228ENST00000486227 IGKV3-7A0A075B6H7 116 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 TRAV24A0A0B4J272 114 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 IGHV1-18A0A0C4DH31 117 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 HAX1O00165 279 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 HLA-DQA1P01909 254 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 GNLYP22749 145 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 PLA2G2CQ5R387 149 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 DNAJC4Q9NNZ3 241 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 FAM208BQ5VWN6 2430 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 GRIFINA4D1Z8 144 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 IGHV2-5P01817 119 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 MMD2Q8IY49 270 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 LRTM2Q8N967 370 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 FAM222BQ8WU58 562 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 TRBV9A0A0B4J1U6 114 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 C9JQL5 133 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 CDKN1AP38936 164 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 RTN4RL2Q86UN3 420 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 PRSS33Q8NF86 280 aa9.25□□□□□ -0.93
HDAC6-228ENST00000486227 C17orf100A8MU93 164 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 C17orf98A8MV24 154 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 LY6EQ16553 131 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 C10orf113Q5VZT2 155 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 MIC13Q5XKP0 118 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 WDR82Q6UXN9 313 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 Q6ZS92 163 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 FAM216AQ8WUB2 273 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 MRPL37Q9BZE1 423 aaKnown RBP9.24□□□□□ -0.93
HDAC6-228ENST00000486227 PROK2Q9HC23 129 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 CUL9Q8IWT3 2517 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 K7ENP7 123 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 ETV2O00321 342 aaPredicted RBP9.24□□□□□ -0.93
HDAC6-228ENST00000486227 LOXL3P58215 753 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 PNKDQ8N490 385 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 RABAC1Q9UI14 185 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 LRRC75BQ2VPJ9 315 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 SFRP2Q96HF1 295 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 QTRT1Q9BXR0 403 aaKnown RBP9.24□□□□□ -0.93
HDAC6-228ENST00000486227 CEACAM18A8MTB9 384 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 OTX1P32242 354 aaPredicted RBP9.24□□□□□ -0.93
HDAC6-228ENST00000486227 OR4A47Q6IF82 309 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 OR2D3Q8NGH3 330 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 YAE1D1Q9NRH1 226 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 TMEM56-RWDD3S4R434 201 aa9.24□□□□□ -0.93
HDAC6-228ENST00000486227 RPL23P62829 140 aaKnown RBP9.23□□□□□ -0.93
HDAC6-228ENST00000486227 UNQ5815/PRO19632Q6UWF5 114 aa9.23□□□□□ -0.93
HDAC6-228ENST00000486227 ARL6IP6Q8N6S5 226 aa9.23□□□□□ -0.93
HDAC6-228ENST00000486227 SSBP3Q9BWW4 388 aaPredicted RBP9.23□□□□□ -0.93
HDAC6-228ENST00000486227 MAP1LC3CQ9BXW4 147 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms