RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PRNDQ9UKY0 176 aa13.45□□□□□ -0.26
VIM-205ENST00000485947 TRAV14DV4A0A0A6YYC5 116 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 C15orf61A6NNL5 157 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 BOLA2-SMG1P6H3BVE0 249 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 K7EPK0 472 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 UPK2O00526 184 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 MED6O75586 246 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 IGKV1D-33P01593 117 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 IGKV1-33P01594 117 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 LYL1P12980 280 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 S100A10P60903 97 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 HIST2H2BDQ6DRA6 164 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 PRSS54Q6PEW0 395 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 VKORC1L1Q8N0U8 176 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 FAM71E2Q8N5Q1 922 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 C11orf44Q8N8P7 122 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 OR4X2Q8NGF9 303 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 OR8H1Q8NGG4 311 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 FKBP11Q9NYL4 201 aa13.44□□□□□ -0.26
VIM-205ENST00000485947 LSM5Q9Y4Y9 91 aaKnown RBP13.44□□□□□ -0.26
VIM-205ENST00000485947 WRBO00258 174 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 RBMXL2O75526 392 aaKnown RBP13.43□□□□□ -0.26
VIM-205ENST00000485947 DEDDO75618 318 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 NDUFA3O95167 84 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 TMEM11P17152 192 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 HES1Q14469 280 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 Q5BKY6 102 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 Q8N6K4 173 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 NPBQ8NG41 125 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 OR52E5Q8NH55 327 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 EAF1Q96JC9 268 aaPredicted RBP13.43□□□□□ -0.26
VIM-205ENST00000485947 CITED2Q99967 270 aaPredicted RBP13.43□□□□□ -0.26
VIM-205ENST00000485947 TMEM14BQ9NUH8 114 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 HSPB7Q9UBY9 170 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 FOXA2Q9Y261 457 aaPredicted RBP13.43□□□□□ -0.26
VIM-205ENST00000485947 ZNF257Q9Y2Q1 563 aa13.43□□□□□ -0.26
VIM-205ENST00000485947 HMSDA8MTL9 139 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 SLC25A17O43808 307 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 LY86O95711 162 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 PVALBP20472 110 aaPredicted RBP13.42□□□□□ -0.26
VIM-205ENST00000485947 TNFRSF9Q07011 255 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 PSG5Q15238 335 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 CXorf66Q5JRM2 361 aaPredicted RBP13.42□□□□□ -0.26
VIM-205ENST00000485947 TMEM65Q6PI78 240 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 C5orf56Q8N8D9 126 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 KIAA1456Q9P272 454 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 MBD2Q9UBB5 411 aa13.42□□□□□ -0.26
VIM-205ENST00000485947 RCL1Q9Y2P8 373 aaKnown RBP13.42□□□□□ -0.26
VIM-205ENST00000485947 TSSC4Q9Y5U2 329 aaPredicted RBP13.42□□□□□ -0.26
VIM-205ENST00000485947 FXYD6-FXYD2A0A087WZ82 144 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 ADARB2-AS1A8MUL3 147 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 E5RGE8 158 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 RRHO14718 337 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 NBR2O15453 112 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 SYNGR2O43760 224 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 CRYGBP07316 175 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 MAS1LP35410 378 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 EIF2B2P49770 351 aaKnown RBP13.41□□□□□ -0.26
VIM-205ENST00000485947 SPCS3P61009 180 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 RPL8P62917 257 aaKnown RBP13.41□□□□□ -0.26
VIM-205ENST00000485947 MMDQ15546 238 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 NSUN5P1Q3KNT7 163 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 TMEM95Q3KNT9 176 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 KPRPQ5T749 579 aaPredicted RBP13.41□□□□□ -0.26
VIM-205ENST00000485947 MMD2Q8IY49 270 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 COMMD1Q8N668 190 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 OR11H4Q8NGC9 324 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 OR5B3Q8NH48 314 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 RAB40CQ96S21 281 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 RNF126Q9BV68 326 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 NSG2Q9Y328 171 aa13.41□□□□□ -0.26
VIM-205ENST00000485947 TRAV3A0A0B4J244 114 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 H0YIZ8 118 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 IGHG2P01859 326 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 OR2B8PP59922 312 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 POLR2GP62487 172 aaKnown RBP eCLIP13.4□□□□□ -0.26
VIM-205ENST00000485947 SAMD5Q5TGI4 173 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 ZNF546Q86UE3 836 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 WFDC9Q8NEX5 89 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 RITA1Q96K30 269 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 CIB3Q96Q77 187 aaPredicted RBP13.4□□□□□ -0.26
VIM-205ENST00000485947 QTRT1Q9BXR0 403 aaKnown RBP13.4□□□□□ -0.26
VIM-205ENST00000485947 GON7Q9BXV9 100 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 OR5AC2Q9NZP5 309 aa13.4□□□□□ -0.26
VIM-205ENST00000485947 METTL1Q9UBP6 276 aaKnown RBP13.4□□□□□ -0.26
VIM-205ENST00000485947 TCRBV4S1A1TA0A5B7 111 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 L7N2F9 121 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 IFNA17P01571 189 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 CNTFRP26992 372 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 NUP62P37198 522 aaPredicted RBP13.39□□□□□ -0.27
VIM-205ENST00000485947 P2RY1P47900 373 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 TAS2R30P59541 319 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 HSPE1P61604 102 aaKnown RBP13.39□□□□□ -0.27
VIM-205ENST00000485947 VAMP2P63027 116 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 REC114Q7Z4M0 266 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 PPP1R27Q86WC6 154 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 DCUN1D4Q92564 292 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 RBMXL1Q96E39 390 aaKnown RBP13.39□□□□□ -0.27
VIM-205ENST00000485947 C11orf1Q9H5F2 150 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 TNFSF18Q9UNG2 199 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms