RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 WRBO00258 174 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 ARPC5O15511 151 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 TSC22D2O75157 780 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 MED6O75586 246 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 IFNA17P01571 189 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 HLA-DRB1P01911 266 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 OPN1MWP04001 364 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 RLN2P04090 185 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 OPN1MW2P0DN77 364 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 OPN1MW3P0DN78 364 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 HKR1P10072 659 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 IAPPP10997 89 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 EGR2P11161 476 aaPredicted RBP6.53□□□□□ -1.36
USP4-210ENST00000483212 CX3CL1P78423 397 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 WT1-ASQ06250 92 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 LY6EQ16553 131 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 BSXQ3C1V8 233 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 LGALSLQ3ZCW2 172 aaPredicted RBP6.53□□□□□ -1.36
USP4-210ENST00000483212 TMEM14EPQ6UXP3 125 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 ZNF562Q6V9R5 426 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 C16orf82Q7Z2V1 217 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 ZNF546Q86UE3 836 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 SIGLECL1Q8N7X8 197 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 OR1L8Q8NGR8 309 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 DCUN1D4Q92564 292 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 OR4C12Q96R67 309 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 RAB40CQ96S21 281 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 CLCC1Q96S66 551 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 HSPB9Q9BQS6 159 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 COMMD5Q9GZQ3 224 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 GSX1Q9H4S2 264 aaPredicted RBP6.53□□□□□ -1.36
USP4-210ENST00000483212 LYRM2Q9NU23 88 aaPredicted RBP6.53□□□□□ -1.36
USP4-210ENST00000483212 C1RLQ9NZP8 487 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 KIAA1456Q9P272 454 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 FBXO7Q9Y3I1 522 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 WSB1Q9Y6I7 421 aa6.53□□□□□ -1.36
USP4-210ENST00000483212 TET2Q6N021 2002 aaPredicted RBP6.53□□□□□ -1.36
USP4-210ENST00000483212 FAM24AA6NFZ4 105 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 SH2D7A6NKC9 451 aaPredicted RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 C15orf62A8K5M9 175 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 PMS2P5A8MQ11 134 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 CEBPZOSA8MTT3 80 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 H3BP45 60 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 HOXA3O43365 443 aaPredicted RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 RBMXL2O75526 392 aaKnown RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 SRP14P37108 136 aaKnown RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 RPL27AP46776 148 aaKnown RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 EIF2B2P49770 351 aaKnown RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 ZNF345Q14585 488 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 TNXAQ16473 311 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 ASPHD1Q5U4P2 390 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 PVRIGQ6DKI7 326 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 CLEC9AQ6UXN8 241 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 HAPLN4Q86UW8 402 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 KCNRGQ8N5I3 272 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 OR2C3Q8N628 320 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 TMEM252Q8N6L7 170 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 OR10W1Q8NGF6 305 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 OR5R1Q8NH85 324 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 SSMEM1Q8WWF3 244 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 SRSF12Q8WXF0 261 aaKnown RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 BSCL2Q96G97 398 aaPredicted RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 CIB3Q96Q77 187 aaPredicted RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 MFFQ9GZY8 342 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 PSENENQ9NZ42 101 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 PITPNC1Q9UKF7 332 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 VPREB3Q9UKI3 123 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 SONP18583 2426 aaKnown RBP6.52□□□□□ -1.37
USP4-210ENST00000483212 NAV3Q8IVL0 2385 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 TNCP24821 2201 aa6.52□□□□□ -1.37
USP4-210ENST00000483212 NSD1Q96L73 2696 aaPredicted RBP6.51□□□□□ -1.37
USP4-210ENST00000483212 A0A1W2PN81 502 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 LINC01548A6NM66 108 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 PRSS46E5RG02 174 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 L7N2F9 121 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 GPR137BO60478 399 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 LY86O95711 162 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 RNASE2P10153 161 aaKnown RBP6.51□□□□□ -1.37
USP4-210ENST00000483212 AREGP15514 252 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 PVALBP20472 110 aaPredicted RBP6.51□□□□□ -1.37
USP4-210ENST00000483212 HNF1AP20823 631 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 RPL12P30050 165 aaKnown RBP6.51□□□□□ -1.37
USP4-210ENST00000483212 CHRNA7P36544 502 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 HOXA1P49639 335 aaPredicted RBP6.51□□□□□ -1.37
USP4-210ENST00000483212 CRIP2P52943 208 aaPredicted RBP6.51□□□□□ -1.37
USP4-210ENST00000483212 GNB1P62873 340 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 VAMP2P63027 116 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 EWSR1Q01844 656 aaKnown RBP eCLIP6.51□□□□□ -1.37
USP4-210ENST00000483212 ARL16Q0P5N6 197 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 OR2F1Q13607 317 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 FXYD3Q14802 87 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 PLGLAQ15195 96 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 C19orf54Q5BKX5 351 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 ACOT7LQ6ZUV0 252 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 STPG2Q8N412 459 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 TMEM86BQ8N661 226 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 RASL11BQ9BPW5 248 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 SRSF8Q9BRL6 282 aaKnown RBP6.51□□□□□ -1.37
USP4-210ENST00000483212 HINT2Q9BX68 163 aa6.51□□□□□ -1.37
USP4-210ENST00000483212 PLEKHA3Q9HB20 300 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms