RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 OR5AP2Q8NGF4 316 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 OR9G4Q8NGQ1 327 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 OR4A5Q8NH83 315 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 TMEM167AQ8TBQ9 72 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 SNAPC3Q92966 411 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 YIPF6Q96EC8 236 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 ASCL2Q99929 193 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 AIFM2Q9BRQ8 373 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 SLC5A7Q9GZV3 580 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 CCL28Q9NRJ3 127 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF257Q9Y2Q1 563 aa5.19□□□□□ -1.58
CCDC88A-213ENST00000476903 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 DPPA5A6NC42 116 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 MEIS3P1A6NDR6 274 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 NPIPB5A8MRT5 1133 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 H0Y980 276 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 RBFOX2O43251 390 aaKnown RBP eCLIP5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 DHFRP00374 187 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 IGLV1-51P01701 117 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 TRBV12-3P01733 135 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 PRH1P02810 166 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 FCER2P06734 321 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 PTHLHP12272 177 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 RPL27AP46776 148 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 BRWD1-AS2P59051 145 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 TAS2R46P59540 309 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 TAS2R20P59543 309 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 HERV-K104P61576 105 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 LSM3P62310 102 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 RPL8P62917 257 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF45Q02386 682 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 EXOSC2Q13868 293 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 C15orf32Q32M92 178 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 C10orf55Q5SWW7 151 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 HAPLN4Q86UW8 402 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 SPAG16Q8N0X2 631 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 SAMD12Q8N8I0 201 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 CD300LFQ8TDQ1 290 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 BORCS5Q969J3 196 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 SLC25A46Q96AG3 418 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 FYTTD1Q96QD9 318 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 SLC2A9Q9NRM0 540 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 BET1LQ9NYM9 111 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 EHFQ9NZC4 300 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 PEMTQ9UBM1 199 aa5.18□□□□□ -1.58
CCDC88A-213ENST00000476903 HMX3A6NHT5 357 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 TEX22C9J3V5 150 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 BMPR1BO00238 502 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 SULT1C2O00338 296 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 OR2J3O76001 311 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 HPRT1P00492 218 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 CSN3P07498 182 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 IL6RP08887 468 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 FRMD6-AS1P0C7T7 363 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF735P0CB33 412 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 NQO2P16083 231 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 HLA-GP17693 338 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 TAS2R31P59538 309 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 AADACL3Q5VUY0 350 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 OR4A47Q6IF82 309 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 LCN12Q6JVE5 192 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 DHRS11Q6UWP2 260 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 IL34Q6ZMJ4 242 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 ZNF818PQ6ZRF7 136 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 SSX9Q7RTT3 188 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 TMEM17Q86X19 198 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 LYSMD2Q8IV50 215 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 SBSPONQ8IVN8 264 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 SGPP2Q8IWX5 399 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 OR5H2Q8NGV7 314 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 OR51H1Q8NH63 302 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 FUNDC2Q9BWH2 189 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 KRTAP2-2Q9BYT5 123 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 HRASLSQ9HDD0 168 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 SIGLEC8Q9NYZ4 499 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 MBD2Q9UBB5 411 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 ANAPC10Q9UM13 185 aa5.17□□□□□ -1.58
CCDC88A-213ENST00000476903 SMIM31A0A1B0GVY4 71 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 A0A1B0GW64 132 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 CGB1A6NKQ9 187 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 E7EUB6 86 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 PMP2P02689 132 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 EIF4EP06730 217 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 CRYGCP07315 174 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 FGF2P09038 288 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 IGHV4-30-4P0DP06 118 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 DEFA4P12838 97 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 AREGP15514 252 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 HIST1H1BP16401 226 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 CTRB1P17538 263 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 PSMB6P28072 239 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 GNRHRP30968 328 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 PRSS3P35030 304 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 RFX2P48378 723 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 ERVK-16P61578 105 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 POU2AF1Q16633 256 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 CTRB2Q6GPI1 263 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 WDR73Q6P4I2 378 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 GTSCR1Q86UQ5 136 aa5.16□□□□□ -1.58
CCDC88A-213ENST00000476903 CMTM1Q8IZ96 169 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 280.3 ms