RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF2Q9BSG1 426 aaPredicted RBP14.11□□□□□ -0.15
CCDC88B-206ENST00000473405 FXYD6Q9H0Q3 95 aa14.11□□□□□ -0.15
CCDC88B-206ENST00000473405 SRD5A3Q9H8P0 318 aa14.11□□□□□ -0.15
CCDC88B-206ENST00000473405 PLECQ15149 4684 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-206ENST00000473405 PGLYRP1O75594 196 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-206ENST00000473405 PMP2P02689 132 aa14.1□□□□□ -0.15
CCDC88B-206ENST00000473405 ZNF57Q68EA5 555 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-206ENST00000473405 GDPD1Q8N9F7 314 aa14.1□□□□□ -0.15
CCDC88B-206ENST00000473405 F2RP25116 425 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 PTBP1P26599 531 aaKnown RBP eCLIP14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 TAS2R46P59540 309 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 TM4SF20Q53R12 229 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 BTNL8Q6UX41 500 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 UXS1Q8NBZ7 420 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 TSPAN14Q8NG11 270 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 FCAMRQ8WWV6 532 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 SLC25A46Q96AG3 418 aa14.09□□□□□ -0.15
CCDC88B-206ENST00000473405 ALMS1Q8TCU4 4167 aa14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 TEX50A0A1B0GTY4 177 aa14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 EIF4EP06730 217 aaKnown RBP14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 MFAP2P55001 183 aa14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 ZNF585BQ52M93 769 aa14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 LYSMD2Q8IV50 215 aa14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 OR5H2Q8NGV7 314 aa14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 ZNF436Q9C0F3 470 aaPredicted RBP14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 NDUFA4L2Q9NRX3 87 aa14.08□□□□□ -0.16
CCDC88B-206ENST00000473405 A0A087WXM4 84 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 IGHV3-35A0A0C4DH35 117 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 SERPINE2P07093 398 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 TRAPPC2P0DI81 140 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 TRAPPC2BP0DI82 140 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 C8orf88P0DMB2 117 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 OR13C7P0DN81 318 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 PRSS3P35030 304 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 HRH1P35367 487 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 ERVK-16P61578 105 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 THOC7Q6I9Y2 204 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 SLC16A13Q7RTY0 426 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 DGCR14Q96DF8 476 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 THYN1Q9P016 225 aa14.07□□□□□ -0.16
CCDC88B-206ENST00000473405 TGOLN2O43493 480 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 SCAF4O95104 1147 aaKnown RBP14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 KRASP01116 189 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 G6PCP35575 357 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 LPAR6P43657 344 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 HSD17B13Q7Z5P4 300 aaPredicted RBP14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 CMTM1Q8IZ96 169 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 CADM3Q8N126 398 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 OR1L8Q8NGR8 309 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 VN1R17PQ8TDU5 208 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 GPX8Q8TED1 209 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 TMEM190Q8WZ59 177 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 VCX3AQ9NNX9 186 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 NSG2Q9Y328 171 aa14.06□□□□□ -0.16
CCDC88B-206ENST00000473405 OR2T8A6NH00 312 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 F8W735 103 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 GPR31O00270 319 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 TNFAIP8O95379 198 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 HLA-DMAP28067 261 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 ELLP55199 621 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 NCS1P62166 190 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 PLET1Q6UQ28 207 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 OR52B4Q8NGK2 314 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 OR6F1Q8NGZ6 308 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 LSM10Q969L4 123 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 MARC2Q969Z3 335 aa14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 F11RQ9Y624 299 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-206ENST00000473405 DBX1A6NMT0 343 aa14.04□□□□□ -0.16
CCDC88B-206ENST00000473405 HINT2Q9BX68 163 aa14.04□□□□□ -0.16
CCDC88B-206ENST00000473405 TMEM14BQ9NUH8 114 aa14.04□□□□□ -0.16
CCDC88B-206ENST00000473405 MRPL27Q9P0M9 148 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-206ENST00000473405 UFC1Q9Y3C8 167 aa14.04□□□□□ -0.16
CCDC88B-206ENST00000473405 OR51B2Q9Y5P1 312 aa14.04□□□□□ -0.16
CCDC88B-206ENST00000473405 TRAV25A0A0B4J276 109 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 CYB5BO43169 146 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 APOA1P02647 267 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 PHLDA2Q53GA4 152 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 BSCL2Q96G97 398 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 ZNF414Q96IQ9 312 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 CHRDL1Q9BU40 450 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 FUNDC2Q9BWH2 189 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 COMMD3Q9UBI1 195 aa14.03□□□□□ -0.16
CCDC88B-206ENST00000473405 IGHV3-21A0A0B4J1V1 117 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 C15orf61A6NNL5 157 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 K7EIM0 57 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 ADMP35318 185 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 VBP1P61758 197 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 ANKRD55Q3KP44 614 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 SLC25A24Q6NUK1 477 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 OR5B3Q8NH48 314 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 SCARB1Q8WTV0 552 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 ATP6V0BQ99437 205 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 GGTLC1Q9BX51 225 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 SCPEP1Q9HB40 452 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 DAZ1Q9NQZ3 744 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 FAM212BQ9NTI7 297 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 C21orf62Q9NYP8 219 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 PRNDQ9UKY0 176 aa14.02□□□□□ -0.17
CCDC88B-206ENST00000473405 SNAPC5O75971 98 aa14.01□□□□□ -0.17
CCDC88B-206ENST00000473405 IGKV1-39P01597 117 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms