RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GUCA2BQ16661 112 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 HAGHQ16775 308 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 FAM106AQ4KMX7 169 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 RNASE12Q5GAN4 147 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 GPHB5Q86YW7 130 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 CMTM3Q96MX0 182 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 NEURL2Q9BR09 285 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 SRSF8Q9BRL6 282 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 NAA50Q9GZZ1 169 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 SCPEP1Q9HB40 452 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 ZNF785A8K8V0 405 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 FAM25AB3EWG3 89 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 FAM25CB3EWG5 89 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 FAM25GB3EWG6 89 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 CLEC3BP05452 202 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 CD7P09564 240 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 SMIM18P0DKX4 95 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 OR13C7P0DN81 318 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 RCVRNP35243 200 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 RORCP51449 518 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 ZNF585BQ52M93 769 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 THOC7Q6I9Y2 204 aaKnown RBP11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 GDPD1Q8N9F7 314 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 OR1L8Q8NGR8 309 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 WDR89Q96FK6 387 aaPredicted RBP11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 SPATA25Q9BR10 227 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 WFDC10AQ9H1F0 79 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 SLC2A8Q9NY64 477 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 THYN1Q9P016 225 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 OR51B2Q9Y5P1 312 aa11.86□□□□□ -0.51
CCDC88B-205ENST00000472524 STARD9Q9P2P6 4700 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 IGHV3-35A0A0C4DH35 117 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 TMEM213A2RRL7 107 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 CYB5BO43169 146 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 SNAPC5O75971 98 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 TPPPO94811 219 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 FGF2P09038 288 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 CBLN1P23435 193 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 S100GP29377 79 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 WT1-ASQ06250 92 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 SLC25A24Q6NUK1 477 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 MZT2AQ6P582 158 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 LAX1Q8IWV1 398 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 ZNF502Q8TBZ5 544 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 EDA2RQ9HAV5 297 aa11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 TECRQ9NZ01 308 aaKnown RBP11.85□□□□□ -0.51
CCDC88B-205ENST00000472524 IGHV3-21A0A0B4J1V1 117 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 A8MWP6 167 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 M0QYG6 137 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 SERPINE2P07093 398 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 TM4SF20Q53R12 229 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 LPCAT3Q6P1A2 487 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 PLET1Q6UQ28 207 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 UNQ9165/PRO28630Q6UXU0 137 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 HSD17B13Q7Z5P4 300 aaPredicted RBP11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 TBC1D26Q86UD7 250 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 DEFB125Q8N687 156 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 UXS1Q8NBZ7 420 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 LSM10Q969L4 123 aaKnown RBP11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 NDUFA4L2Q9NRX3 87 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 MLXQ9UH92 298 aa11.84□□□□□ -0.51
CCDC88B-205ENST00000472524 GABARAPO95166 117 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 PTBP1P26599 531 aaKnown RBP eCLIP11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 CTF1Q16619 201 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 GPR107Q5VW38 600 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 ZNF57Q68EA5 555 aaPredicted RBP11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 BTNL8Q6UX41 500 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 SLC38A6Q8IZM9 456 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 TMEM61Q8N0U2 210 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 AP3S1Q92572 193 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 SRD5A3Q9H8P0 318 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 RETNQ9HD89 108 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 EXTL2Q9UBQ6 330 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 PRNDQ9UKY0 176 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 CEPT1Q9Y6K0 416 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 BIRC6Q9NR09 4857 aa11.83□□□□□ -0.52
CCDC88B-205ENST00000472524 OR2T8A6NH00 312 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 DBX1A6NMT0 343 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 C15orf61A6NNL5 157 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 OR11H12B2RN74 326 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 TGOLN2O43493 480 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 SCAF4O95104 1147 aaKnown RBP11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 MFAP2P55001 183 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 VN1R17PQ8TDU5 208 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 ISOC1Q96CN7 298 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 KLK11Q9UBX7 282 aa11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 F11RQ9Y624 299 aaKnown RBP11.82□□□□□ -0.52
CCDC88B-205ENST00000472524 CSMD3Q7Z407 3707 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 IFNA6P05013 189 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 PGAM2P15259 253 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 ZNF182P17025 639 aaPredicted RBP11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 UCP3P55916 312 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 H2BFWTQ7Z2G1 175 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 CADM3Q8N126 398 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 UBAC2Q8NBM4 344 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 OR52I2Q8NH67 350 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 MRGPRFQ96AM1 343 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 TMEM56Q96MV1 263 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 TSC22D3Q99576 134 aa11.81□□□□□ -0.52
CCDC88B-205ENST00000472524 FAM110AQ9BQ89 295 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms