RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 F8VWA3 439 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 PEX7O00628 323 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 NPFFO15130 113 aa11.4□□□□□ -0.58
COL6A3-209ENST00000472056 C1QTNF9P0C862 333 aa11.4□□□□□ -0.59
COL6A3-209ENST00000472056 KRTCAP3Q53RY4 240 aa11.4□□□□□ -0.59
COL6A3-209ENST00000472056 TMEM170BQ5T4T1 132 aa11.4□□□□□ -0.59
COL6A3-209ENST00000472056 EEF1AKMT3Q96AZ1 226 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 AHRRA9YTQ3 701 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HYAL3O43820 417 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-209ENST00000472056 TNFSF13O75888 250 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 UCP2P55851 309 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 C16orf97H3BN30 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BKO60814 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BJP06899 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BOP23527 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BBP33778 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BDP58876 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BCP62807 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST2H2BEQ16778 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-209ENST00000472056 ZNF562Q6V9R5 426 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BHQ93079 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 SCGB3A1Q96QR1 104 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BNQ99877 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIST1H2BMQ99879 126 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 CITED1Q99966 193 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 ZNF703Q9H7S9 590 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-209ENST00000472056 SDF2L1Q9HCN8 221 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HCSTQ9UBK5 93 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 SORL1Q92673 2214 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-209ENST00000472056 TRAV8-4A0A0B4J246 113 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 GRIFINA4D1Z8 144 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 OR2H2O95918 312 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 CCL20P78556 96 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HEPN1Q6WQI6 88 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 RPRMQ9NS64 109 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 TMEM14DPA8MWL7 114 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HBDP02042 147 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 GPR6P46095 362 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-209ENST00000472056 PLPPR2Q96GM1 343 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 PRR13Q9NZ81 148 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 TCF19Q9Y242 345 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 HIGD1CA8MV81 97 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 NKX2-8O15522 239 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 CXorf66Q5JRM2 361 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-209ENST00000472056 NR2C2APQ86WQ0 139 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 A0A1W2PP11 408 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 PGFP49763 221 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 LOXL3P58215 753 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 FOXL1Q12952 345 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 BHLHA9Q7RTU4 235 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 DTX1Q86Y01 620 aa11.39□□□□□ -0.59
COL6A3-209ENST00000472056 TMEM238C9JI98 176 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 LGALS1P09382 135 aaKnown RBP11.38□□□□□ -0.59
COL6A3-209ENST00000472056 SRSF7Q16629 238 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL6A3-209ENST00000472056 SLC25A47Q6Q0C1 308 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 AMER3Q8N944 861 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 NRN1Q9NPD7 142 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 APOBEC4Q8WW27 367 aaKnown RBP11.38□□□□□ -0.59
COL6A3-209ENST00000472056 FBLN5Q9UBX5 448 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 TMSB15BA0A087X1C1 80 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 MEX3AA1L020 520 aaKnown RBP11.38□□□□□ -0.59
COL6A3-209ENST00000472056 TRAV8-6A0A0B4J262 113 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 HOXA3O43365 443 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-209ENST00000472056 SRSF1Q07955 248 aaKnown RBP eCLIP11.38□□□□□ -0.59
COL6A3-209ENST00000472056 ZNF56Q15929 161 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 ASCL4Q6XD76 172 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 ZNF721Q8TF20 911 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 ADAMTS9Q9P2N4 1935 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 ATXN8Q156A1 80 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 C14orf144Q96I85 54 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 NPFFR1Q9GZQ6 430 aa11.38□□□□□ -0.59
COL6A3-209ENST00000472056 ECSCRQ19T08 205 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 DMRTC1Q5HYR2 192 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 TMEM240Q5SV17 173 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 LDLRAD2Q5SZI1 272 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 SYNGR3O43761 229 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 UNC119Q13432 240 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 ZNF585BQ52M93 769 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 C1QL3Q5VWW1 255 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 TRAV21A0A0B4J279 112 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 APOHP02749 345 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-209ENST00000472056 NBEAP1P0C6P0 100 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 LINC00305Q7Z4B0 112 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 DSCAML1Q8TD84 2053 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 LHX8Q68G74 356 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 OR5AN1Q8NGI8 311 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 SOSTQ9BQB4 213 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 RTN4RQ9BZR6 473 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 TRBV23-1A0A0A0MS06 115 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 SCTP09683 121 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 SSTR5P35346 364 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 PRSS41Q7RTY9 318 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 IDI2-AS1Q9NZ38 188 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 TNFRSF18Q9Y5U5 241 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 J3KRW8 73 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 NPPCP23582 126 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 FUT5Q11128 374 aa11.37□□□□□ -0.59
COL6A3-209ENST00000472056 SAMD5Q5TGI4 173 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms