RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 TRGV10A0A0A0MS01 117 aa12.82□□□□□ -0.36
LMNB1-203ENST00000460265 ERVK11-1P61568 191 aa12.82□□□□□ -0.36
LMNB1-203ENST00000460265 SPRNQ5BIV9 151 aa12.82□□□□□ -0.36
LMNB1-203ENST00000460265 CORO2AQ92828 525 aa12.82□□□□□ -0.36
LMNB1-203ENST00000460265 J3QW42 95 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 NDUFB8O95169 186 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 RPL19P84098 196 aaKnown RBP12.81□□□□□ -0.36
LMNB1-203ENST00000460265 TEX43Q6ZNM6 134 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 VSTM5A8MXK1 200 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 F6UZH7 168 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 REG1BP48304 166 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 SPATA45Q537H7 98 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 TPTE2P1Q5T6R2 138 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 OR10G9Q8NGN4 311 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 OR10G7Q8NGN6 311 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 ANAPC16Q96DE5 110 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 DKK4Q9UBT3 224 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 LINC00473A8K010 186 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 K7EP13 123 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 KBTBD11O94819 623 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 LSM10Q969L4 123 aaKnown RBP12.81□□□□□ -0.36
LMNB1-203ENST00000460265 NUDT11Q96G61 164 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 IMMP2LQ96T52 175 aa12.81□□□□□ -0.36
LMNB1-203ENST00000460265 LDLRAD2Q5SZI1 272 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 TMEM108Q6UXF1 575 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 ERASQ7Z444 233 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 ABHD12Q8N2K0 398 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 FAM216BQ8N7L0 139 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 SSMEM1Q8WWF3 244 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 TAF15Q92804 592 aaKnown RBP eCLIP12.8□□□□□ -0.36
LMNB1-203ENST00000460265 TMEM204Q9BSN7 226 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 ZFHX4Q86UP3 3567 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 TRAV1-1A0A0B4J248 108 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 LRRC30A6NM36 301 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 MGST3O14880 152 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 IL3RAP26951 378 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 PSMB3P49720 205 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 PAFAH1B2P68402 229 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 MEF2BQ02080 365 aaPredicted RBP12.8□□□□□ -0.36
LMNB1-203ENST00000460265 C11orf53Q8IXP5 236 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 PARLQ9H300 379 aa12.8□□□□□ -0.36
LMNB1-203ENST00000460265 A0A1W2PN81 502 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 SLC25A6P12236 298 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 FBLN7Q53RD9 439 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 QTRT1Q9BXR0 403 aaKnown RBP12.79□□□□□ -0.36
LMNB1-203ENST00000460265 BET1LQ9NYM9 111 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 RNF7Q9UBF6 113 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 UQCR10Q9UDW1 63 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 SLC25A15Q9Y619 301 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 CACNA1AO00555 2505 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 SRSF7Q16629 238 aaKnown RBP eCLIP12.79□□□□□ -0.36
LMNB1-203ENST00000460265 TIMM23BQ5SRD1 257 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 DUX4L9Q6RFH8 374 aaPredicted RBP12.79□□□□□ -0.36
LMNB1-203ENST00000460265 TCF23Q7RTU1 214 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 GCSAMQ8N6F7 178 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 RNF115Q9Y4L5 304 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.79□□□□□ -0.361e-6■■□□□ 12.4
LMNB1-203ENST00000460265 DIRC3C9JPN6 131 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 ENSAO43768 121 aaKnown RBP12.79□□□□□ -0.36
LMNB1-203ENST00000460265 PRB3Q04118 309 aaPredicted RBP12.79□□□□□ -0.36
LMNB1-203ENST00000460265 ZNF525Q8N782 197 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 SIGLECL1Q8N7X8 197 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 OR4B1Q8NGF8 309 aa12.79□□□□□ -0.36
LMNB1-203ENST00000460265 PINX1Q96BK5 328 aaKnown RBP12.79□□□□□ -0.36
LMNB1-203ENST00000460265 HSD17B10Q99714 261 aaKnown RBP12.79□□□□□ -0.36
LMNB1-203ENST00000460265 C16orf97H3BN30 126 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 GLRXP35754 106 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 SRP14P37108 136 aaKnown RBP12.78□□□□□ -0.36
LMNB1-203ENST00000460265 MBNL3Q9NUK0 354 aaKnown RBP12.78□□□□□ -0.36
LMNB1-203ENST00000460265 CALYQ9NYX4 217 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 DCHS1Q96JQ0 3298 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 LOC105371242A0A075B767 164 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 HSBP1L1C9JCN9 74 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 TMEM238C9JI98 176 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 ADH4P08319 380 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 COX5AP20674 150 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 C1orf162Q8NEQ5 155 aaPredicted RBP12.78□□□□□ -0.36
LMNB1-203ENST00000460265 SNRNP40Q96DI7 357 aaKnown RBP12.78□□□□□ -0.36
LMNB1-203ENST00000460265 IGKV1D-17A0A075B6S4 117 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 TRBV6-6A0A0A6YYG2 114 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 ACTL6BO94805 426 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 CRISP2P16562 243 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 TFF3Q07654 80 aa12.78□□□□□ -0.36
LMNB1-203ENST00000460265 RALYQ9UKM9 306 aaKnown RBP12.78□□□□□ -0.36
LMNB1-203ENST00000460265 CHTOPQ9Y3Y2 248 aaKnown RBP12.78□□□□□ -0.36
LMNB1-203ENST00000460265 MSMPQ1L6U9 139 aa12.77□□□□□ -0.36
LMNB1-203ENST00000460265 ATMQ13315 3056 aa12.77□□□□□ -0.37
LMNB1-203ENST00000460265 SERF1AO75920 110 aa12.77□□□□□ -0.37
LMNB1-203ENST00000460265 FAM87AP0C7U9 286 aa12.77□□□□□ -0.37
LMNB1-203ENST00000460265 SEM1Q6ZVN7 128 aa12.77□□□□□ -0.37
LMNB1-203ENST00000460265 WDR61Q9GZS3 305 aaKnown RBP12.77□□□□□ -0.37
LMNB1-203ENST00000460265 ZNF586Q9NXT0 402 aa12.77□□□□□ -0.37
LMNB1-203ENST00000460265 COX11Q9Y6N1 276 aa12.77□□□□□ -0.37
LMNB1-203ENST00000460265 ADMP35318 185 aa12.76□□□□□ -0.37
LMNB1-203ENST00000460265 ZBTB34Q8NCN2 500 aa12.76□□□□□ -0.37
LMNB1-203ENST00000460265 SLC24A4Q8NFF2 622 aa12.76□□□□□ -0.37
LMNB1-203ENST00000460265 ZNF596Q8TC21 504 aa12.76□□□□□ -0.37
LMNB1-203ENST00000460265 TMEM147Q9BVK8 224 aa12.76□□□□□ -0.37
LMNB1-203ENST00000460265 ZNRD1Q9P1U0 126 aa12.76□□□□□ -0.37
LMNB1-203ENST00000460265 FAM215AQ9Y5M1 114 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms