RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CXorf1O96002 111 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 CYB5AP00167 134 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 IFITM1P13164 125 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 LMO1P25800 156 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 GPR183P32249 361 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 THBS3P49746 956 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 FABP6P51161 128 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 PMAIP1Q13794 54 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 ATXN7L3Q14CW9 347 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 OR1C1Q15619 314 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 IZUMO4Q1ZYL8 232 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 SPATA45Q537H7 98 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 FAM27D1Q5T7N8 215 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 C1orf174Q8IYL3 243 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 ABCA7Q8IZY2 2146 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 BORCS7Q96B45 105 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF503Q96F45 646 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 SCGB3A2Q96PL1 93 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 KIR2DL4Q99706 377 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 PDCD1LG2Q9BQ51 273 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM59Q9BXS4 323 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 MRPL32Q9BYC8 188 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 PRRG4Q9BZD6 226 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 MARCOQ9UEW3 520 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 ITPR1Q14643 2758 aa3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 HELZ2Q9BYK8 2649 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM150CB9EJG8 249 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 M0R1X1 148 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 DUS4LO95620 317 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 LGALS1P09382 135 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 CRYBB3P26998 211 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 RPS24P62847 133 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 MRPS21P82921 87 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 SPHARQ15513 63 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 DUSP5Q16690 384 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ACSF3Q4G176 576 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 C1orf189Q5VU69 101 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 MRPL54Q6P161 138 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 MRGPREQ86SM8 312 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 OR51E1Q8TCB6 317 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 WFDC5Q8TCV5 224 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ARPC1AQ92747 370 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 C9orf85Q96MD7 179 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 MCEEQ96PE7 176 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 TMEM204Q9BSN7 226 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 WDR13Q9H1Z4 485 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 C5orf66Q9H5L9 145 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 TAS2R5Q9NYW4 299 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 DEC1Q9P2X7 70 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 NSG2Q9Y328 171 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 A0A1W2PP11 408 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 OR4C45A6NMZ5 311 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF732B4DXR9 585 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 J3QKU1 62 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 CCL24O00175 119 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ARPC2O15144 300 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 SPRY3O43610 288 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 CXCL13O43927 109 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 KLF7O75840 302 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 CLDN14O95500 239 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 PMS2P2O95744 297 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 IL3P08700 152 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 HOXD3P31249 432 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 DUTP33316 252 aaKnown RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 SDC2P34741 201 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 EMDP50402 254 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 DLX1P56177 255 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 COL10A1Q03692 680 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 LTBQ06643 244 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ADIRFQ15847 76 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF260Q3ZCT1 412 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 TTC32Q5I0X7 151 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 LCN10Q6JVE6 187 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 Q71RC1 249 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 CMC1Q7Z7K0 106 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 SFTPA2Q8IWL1 248 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 NPWQ8N729 165 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 OR11H6Q8NGC7 330 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 OR10D3Q8NH80 312 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 CNIH3Q8TBE1 160 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 TWIST2Q8WVJ9 160 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 PLEKHB2Q96CS7 222 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ADAT3Q96EY9 351 aaPredicted RBP3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 ZC2HC1AQ96GY0 325 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 RPRMQ9NS64 109 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 AIG1Q9NVV5 245 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 PILRAQ9UKJ1 303 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 PROCRQ9UNN8 238 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 DMXL2Q8TDJ6 3036 aa3.91□□□□□ -1.78
CCDC88A-209ENST00000456975 TRBV24-1A0A075B6N3 115 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 MUC21A0A0G2JKD1 596 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 CXorf51AA0A1B0GTR3 108 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 A6NDN8 102 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 SRRM4A7MD48 611 aaKnown RBP3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 FAM72CH0Y354 149 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 ZNF593O00488 134 aaPredicted RBP3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 TIMM23O14925 209 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 WT1P19544 449 aaPredicted RBP3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 CD38P28907 300 aa3.9□□□□□ -1.78
CCDC88A-209ENST00000456975 CD70P32970 193 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms