RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 OR8I2Q8N0Y5 310 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM86AQ8N2M4 240 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF555Q8NEP9 628 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 OR8A1Q8NGG7 326 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 CANT1Q8WVQ1 401 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 C1orf54Q8WWF1 131 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ISOC1Q96CN7 298 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 C18orf15Q96N68 181 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 SND1-IT1Q9HBX3 110 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 RPUSD1Q9UJJ7 312 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 PCTPQ9UKL6 214 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 COQ4Q9Y3A0 265 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 RFNGQ9Y644 331 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ARHGEF5Q12774 1597 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 PRXQ9BXM0 1461 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 PIKFYVEQ9Y2I7 2098 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 TDRD15B5MCY1 1934 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 A0A0J9YY10 115 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 A0A1B0GX78 115 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 KLLNB2CW77 178 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 K7ERU9 68 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 HLA-DQB1P01920 261 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 C1QBP02746 253 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 IL1RNP18510 177 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 S100A4P26447 101 aaKnown RBP1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 CA5AP35218 305 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 AKR1C2P52895 323 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF613Q6PF04 617 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 OR4K13Q8NH42 304 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 THEM6Q8WUY1 208 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 PLEKHB2Q96CS7 222 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 OR2A5Q96R48 311 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 VGLL1Q99990 258 aa1.69□□□□□ -2.14
CCDC88A-208ENST00000444458 SPTBN2O15020 2390 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 CLIP1P30622 1438 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 TRAV36DV7A0A075B6V5 113 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV5-10-1A0A0J9YXX1 117 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 C1orf196B1AJZ1 125 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 I3L521 148 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF682O95780 498 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 CD28P10747 220 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 GATA2P23769 480 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 LYZP61626 148 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 LUZP6Q538Z0 58 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 PACRGLQ8N7B6 248 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF615Q8N8J6 731 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 OR13C8Q8NGS7 320 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 OR5W2Q8NH69 310 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 LMX1AQ8TE12 382 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 IMUPQ9GZP8 106 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 CALML5Q9NZT1 146 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 MAST1Q9Y2H9 1570 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 UBR1Q8IWV7 1749 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 ATRQ13535 2644 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 KLF18A0A0U1RQI7 1052 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 LEUTXA8MZ59 168 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 EPM2AB3EWF7 344 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 C11orf94C9JXX5 98 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM250H0YL14 139 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 LTAP01374 205 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 CSN2P05814 226 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 SRP19P09132 144 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV1-8P0DP01 117 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 NUDT1P36639 197 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 ACVRL1P37023 503 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 CSN1S1P47710 185 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 RPL30P62888 115 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 BSPH1Q075Z2 132 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 DHRS2Q13268 280 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 PCP2Q8IVA1 136 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 LINC01555Q8NAE3 123 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 C12orf57Q99622 126 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 MND1Q9BWT6 205 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 INO80Q9ULG1 1556 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 OR5H14A6NHG9 310 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 TXNDC9O14530 226 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 INAFM2P0DMQ5 153 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 OPRK1P41145 380 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 GABRA2P47869 451 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 NDUFA6P56556 154 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 KRTAP15-1Q3LI76 137 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 TCTE3Q8IZS6 198 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 SLC7A6Q92536 515 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 IGF2BP2-AS1Q96M15 143 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 OR2H1Q9GZK4 316 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF222Q9UK12 451 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 U3KQ87 197 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 TRANK1O15050 2925 aa1.68□□□□□ -2.14
CCDC88A-208ENST00000444458 WDR81Q562E7 1941 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TRBV19A0A075B6N1 114 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 FAM92AA1XBS5 289 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 A6NED7 52 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IFNA10P01566 189 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 FKBP1AP62942 108 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 RNF212Q495C1 297 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 BCL2L15Q5TBC7 163 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 FAAP20Q6NZ36 180 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 MKXQ8IYA7 352 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 PPTC7Q8NI37 304 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms