RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 SMIM8Q96KF7 97 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 PLEKHA3Q9HB20 300 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 ENY2Q9NPA8 101 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 VPREB3Q9UKI3 123 aa18.27■□□□□ 0.52
CPSF4-204ENST00000436336 E7EUB6 86 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 HOXA3O43365 443 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-204ENST00000436336 GPR137BO60478 399 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 TMEM50AO95807 157 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 P2RY1P47900 373 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 RPL23AP62750 156 aaKnown RBP18.26■□□□□ 0.51
CPSF4-204ENST00000436336 HIPK2Q9H2X6 1198 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 GSX1Q9H4S2 264 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-204ENST00000436336 TNFSF18Q9UNG2 199 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 MXRA5Q9NR99 2828 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 A0A1W2PN81 502 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 CGB1A6NKQ9 187 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 ARPC5O15511 151 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 CNIH1O95406 144 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 SRD5A1P18405 259 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 CHRNA7P36544 502 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 VDAC2P45880 294 aaPredicted RBP18.26■□□□□ 0.51
CPSF4-204ENST00000436336 EIF2B2P49770 351 aaKnown RBP18.26■□□□□ 0.51
CPSF4-204ENST00000436336 RBMS3Q6XE24 437 aaKnown RBP18.26■□□□□ 0.51
CPSF4-204ENST00000436336 GRPEL2Q8TAA5 225 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 SRSF12Q8WXF0 261 aaKnown RBP18.26■□□□□ 0.51
CPSF4-204ENST00000436336 PSENENQ9NZ42 101 aa18.26■□□□□ 0.51
CPSF4-204ENST00000436336 INS-IGF2F8WCM5 200 aa18.25■□□□□ 0.51
CPSF4-204ENST00000436336 CX3CL1P78423 397 aa18.25■□□□□ 0.51
CPSF4-204ENST00000436336 FXYD3Q14802 87 aa18.25■□□□□ 0.51
CPSF4-204ENST00000436336 TMEM86BQ8N661 226 aa18.25■□□□□ 0.51
CPSF4-204ENST00000436336 HEYLQ9NQ87 328 aaPredicted RBP18.25■□□□□ 0.51
CPSF4-204ENST00000436336 LYRM2Q9NU23 88 aaPredicted RBP18.25■□□□□ 0.51
CPSF4-204ENST00000436336 HIVEP2P31629 2446 aa18.25■□□□□ 0.51
CPSF4-204ENST00000436336 HIVEP1P15822 2718 aa18.24■□□□□ 0.51
CPSF4-204ENST00000436336 TSC22D2O75157 780 aa18.24■□□□□ 0.51
CPSF4-204ENST00000436336 AMY1AP04745 511 aa18.24■□□□□ 0.51
CPSF4-204ENST00000436336 NKX2-5P52952 324 aaPredicted RBP18.24■□□□□ 0.51
CPSF4-204ENST00000436336 OR2C3Q8N628 320 aa18.24■□□□□ 0.51
CPSF4-204ENST00000436336 INO80EQ8NBZ0 244 aaPredicted RBP18.24■□□□□ 0.51
CPSF4-204ENST00000436336 IGHV7-81A0A0B4J1V7 117 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 A0A1B0GW64 132 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 NUP62P37198 522 aaPredicted RBP18.23■□□□□ 0.51
CPSF4-204ENST00000436336 Q71RC1 249 aaPredicted RBP18.23■□□□□ 0.51
CPSF4-204ENST00000436336 MRPL41Q8IXM3 137 aaKnown RBP18.23■□□□□ 0.51
CPSF4-204ENST00000436336 OR10W1Q8NGF6 305 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 CAV2P51636 162 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 ARPC1AQ92747 370 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 AQP10Q96PS8 301 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 SRSF8Q9BRL6 282 aaKnown RBP18.23■□□□□ 0.51
CPSF4-204ENST00000436336 MFFQ9GZY8 342 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 TNFRSF19Q9NS68 423 aa18.23■□□□□ 0.51
CPSF4-204ENST00000436336 H3BP45 60 aa18.22■□□□□ 0.51
CPSF4-204ENST00000436336 KCNAB3O43448 404 aa18.22■□□□□ 0.51
CPSF4-204ENST00000436336 HKR1P10072 659 aa18.22■□□□□ 0.51
CPSF4-204ENST00000436336 RPL12P30050 165 aaKnown RBP18.22■□□□□ 0.51
CPSF4-204ENST00000436336 ERHP84090 104 aaKnown RBP18.22■□□□□ 0.51
CPSF4-204ENST00000436336 ACOT7LQ6ZUV0 252 aa18.22■□□□□ 0.51
CPSF4-204ENST00000436336 HSD17B13Q7Z5P4 300 aaPredicted RBP18.22■□□□□ 0.51
CPSF4-204ENST00000436336 HSPB9Q9BQS6 159 aa18.22■□□□□ 0.51
CPSF4-204ENST00000436336 RNF222A6NCQ9 220 aa18.21■□□□□ 0.51
CPSF4-204ENST00000436336 FAM24AA6NFZ4 105 aa18.21■□□□□ 0.51
CPSF4-204ENST00000436336 TEX22C9J3V5 150 aa18.21■□□□□ 0.51
CPSF4-204ENST00000436336 RPP30P78346 268 aaKnown RBP18.21■□□□□ 0.51
CPSF4-204ENST00000436336 ZNF345Q14585 488 aa18.21■□□□□ 0.51
CPSF4-204ENST00000436336 SPANXN5Q5MJ07 72 aa18.21■□□□□ 0.51
CPSF4-204ENST00000436336 SLC25A31Q9H0C2 315 aa18.21■□□□□ 0.51
CPSF4-204ENST00000436336 U3KQ87 197 aa18.21■□□□□ 0.51
CPSF4-204ENST00000436336 MSGN1A6NI15 193 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 INAFM1C9JVW0 142 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 NDPQ00604 133 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 WT1-ASQ06250 92 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 C9orf62Q8N4C0 152 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 TMEM252Q8N6L7 170 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 STRAPQ9Y3F4 350 aaKnown RBP18.2■□□□□ 0.5
CPSF4-204ENST00000436336 IGLC7A0M8Q6 106 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 CXCL2P19875 107 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 OR2F1Q13607 317 aa18.2■□□□□ 0.5
CPSF4-204ENST00000436336 LGALSLQ3ZCW2 172 aaPredicted RBP18.2■□□□□ 0.5
CPSF4-204ENST00000436336 SH2D7A6NKC9 451 aaPredicted RBP18.19■□□□□ 0.5
CPSF4-204ENST00000436336 IFNA10P01566 189 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 OR13C7P0DN81 318 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 HTR2BP41595 481 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 TMEM14EPQ6UXP3 125 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 SLC24A4Q8NFF2 622 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 ABHD5Q8WTS1 349 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 OR4C12Q96R67 309 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 FAM103A1Q9BTL3 118 aaKnown RBP18.19■□□□□ 0.5
CPSF4-204ENST00000436336 ZC4H2Q9NQZ6 224 aa18.19■□□□□ 0.5
CPSF4-204ENST00000436336 IGSF23A1L1A6 192 aa18.18■□□□□ 0.5
CPSF4-204ENST00000436336 SNCAP37840 140 aa18.18■□□□□ 0.5
CPSF4-204ENST00000436336 AP2S1P53680 142 aaPredicted RBP18.18■□□□□ 0.5
CPSF4-204ENST00000436336 ATP5IP56385 69 aaPredicted RBP18.18■□□□□ 0.5
CPSF4-204ENST00000436336 EWSR1Q01844 656 aaKnown RBP eCLIP18.18■□□□□ 0.5
CPSF4-204ENST00000436336 BSXQ3C1V8 233 aa18.18■□□□□ 0.5
CPSF4-204ENST00000436336 LAMTOR1Q6IAA8 161 aa18.18■□□□□ 0.5
CPSF4-204ENST00000436336 A0A0D9SG52 128 aa18.18■□□□□ 0.5
CPSF4-204ENST00000436336 STX12Q86Y82 276 aa18.18■□□□□ 0.5
CPSF4-204ENST00000436336 SGMS2Q8NHU3 365 aa18.18■□□□□ 0.5
CPSF4-204ENST00000436336 ZNF418Q8TF45 676 aaPredicted RBP18.18■□□□□ 0.5
CPSF4-204ENST00000436336 FBXO7Q9Y3I1 522 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms