RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 HIST1H2BBP33778 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BDP58876 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BCP62807 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 ICAM4Q14773 271 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST2H2BEQ16778 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BHQ93079 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BNQ99877 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 HIST1H2BMQ99879 126 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 CHRNA10Q9GZZ6 450 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 NRN1Q9NPD7 142 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 MFAP4P55083 255 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 CIRBPQ14011 172 aaKnown RBP12.27□□□□□ -0.44
PTPRU-204ENST00000428026 SFTA2Q6UW10 78 aa12.27□□□□□ -0.44
PTPRU-204ENST00000428026 MRPL32Q9BYC8 188 aaKnown RBP12.27□□□□□ -0.44
PTPRU-204ENST00000428026 ZNF318Q5VUA4 2279 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 hCG_38984A0A1B0GV85 526 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 ADMP35318 185 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 PSG9Q00887 426 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 C10orf126Q8N4M7 172 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 TTC9CQ8N5M4 171 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 FDCSPQ8NFU4 85 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 JPT1Q9UK76 154 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 S4R3C0 116 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 A0A1W2PS18 150 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 RIPPLY3P57055 190 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 TBR1Q16650 682 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 DDB2Q92466 427 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 PRDM13Q9H4Q3 707 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 PIKFYVEQ9Y2I7 2098 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 SMIM10L1P0DMW3 83 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 ZNF124Q15973 351 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 LY6G6FQ5SQ64 297 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 GLRX5Q86SX6 157 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 SAXO1Q8IYX7 474 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 FAM169BQ8N8A8 192 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 SMIM10Q96HG1 83 aa12.27□□□□□ -0.45
PTPRU-204ENST00000428026 FNDC4Q9H6D8 234 aaPredicted RBP12.27□□□□□ -0.45
PTPRU-204ENST00000428026 GPX1P07203 203 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 HOXB1P14653 301 aaPredicted RBP12.26□□□□□ -0.45
PTPRU-204ENST00000428026 GATA2P23769 480 aaPredicted RBP12.26□□□□□ -0.45
PTPRU-204ENST00000428026 ZNF324BQ6AW86 544 aaPredicted RBP12.26□□□□□ -0.45
PTPRU-204ENST00000428026 FOXC2Q99958 501 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 APOMO95445 188 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 LINC00271P0C7V0 271 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 C1QTNF9P0C862 333 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 ZNF56Q15929 161 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 ACSF3Q4G176 576 aaPredicted RBP12.26□□□□□ -0.45
PTPRU-204ENST00000428026 SAMD13Q5VXD3 122 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 GATAD1Q8WUU5 269 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 LCTP09848 1927 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 ACACAQ13085 2346 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 PPP1R17O96001 155 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 ZNF146Q15072 292 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 GFI1BQ5VTD9 330 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 C17orf98A8MV24 154 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 NUDT11Q96G61 164 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 SFXN3Q9BWM7 321 aa12.26□□□□□ -0.45
PTPRU-204ENST00000428026 THSD7BQ9C0I4 1608 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 PCOLCEQ15113 449 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 ZNRF1Q8ND25 227 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 SSBP4Q9BWG4 385 aaPredicted RBP12.25□□□□□ -0.45
PTPRU-204ENST00000428026 IGHMP01871 453 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 C19orf24Q9BVV8 132 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 RNASE7Q9H1E1 156 aaKnown RBP12.25□□□□□ -0.45
PTPRU-204ENST00000428026 TRAV24A0A0B4J272 114 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 FAM106CPP0CH98 169 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 PPP1R32Q7Z5V6 425 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 H0YIZ8 118 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 UBE2CO00762 179 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 MIR17HGQ75NE6 70 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 TMEM171Q8WVE6 324 aa12.25□□□□□ -0.45
PTPRU-204ENST00000428026 IGKV3-20P01619 116 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 IGHV3-23P01764 117 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 TUBA4BQ9H853 241 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 TMEM170AQ8WVE7 144 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 ZSWIM8A7E2V4 1837 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 IGHV3-49A0A0A0MS15 119 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 IGHV3-66A0A0C4DH42 116 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 PGPEP1LA6NFU8 196 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 NBEAP1P0C6P0 100 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 GPX4P36969 197 aaPredicted RBP12.24□□□□□ -0.45
PTPRU-204ENST00000428026 CCL20P78556 96 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 A0A1B0GTI1 187 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 PEX7O00628 323 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 STAG3L3P0CL85 134 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 CSRP1P21291 193 aaKnown RBP12.24□□□□□ -0.45
PTPRU-204ENST00000428026 ZNF525Q8N782 197 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 COPS9Q8WXC6 57 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 OR5P3Q8WZ94 311 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 KIR2DL4Q99706 377 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 UCP1P25874 307 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 PTGDSP41222 190 aa12.24□□□□□ -0.45
PTPRU-204ENST00000428026 GEMIN7Q9H840 131 aaKnown RBP12.24□□□□□ -0.45
PTPRU-204ENST00000428026 PSMB11A5LHX3 300 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 C9orf172C9J069 976 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 OR13C6PQ8NH95 151 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 SCN2AQ99250 2005 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 FAM181BA6NEQ2 426 aa12.23□□□□□ -0.45
PTPRU-204ENST00000428026 C12orf77C9JDV5 145 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms