RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF355PQ9NSJ1 428 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 THYN1Q9P016 225 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 TET2Q6N021 2002 aaPredicted RBP8.01□□□□□ -1.13
CD44-207ENST00000425428 IGHV7-81A0A0B4J1V7 117 aa8□□□□□ -1.13
CD44-207ENST00000425428 TRAV41A0A0B4J266 112 aa8□□□□□ -1.13
CD44-207ENST00000425428 A0A0G2JRQ6 117 aa8□□□□□ -1.13
CD44-207ENST00000425428 FCN1O00602 326 aa8□□□□□ -1.13
CD44-207ENST00000425428 CCNKO75909 580 aa8□□□□□ -1.13
CD44-207ENST00000425428 IFNA10P01566 189 aa8□□□□□ -1.13
CD44-207ENST00000425428 PSMB6P28072 239 aa8□□□□□ -1.13
CD44-207ENST00000425428 HTR2BP41595 481 aa8□□□□□ -1.13
CD44-207ENST00000425428 BCAP31P51572 246 aa8□□□□□ -1.13
CD44-207ENST00000425428 ATP5IP56385 69 aaPredicted RBP8□□□□□ -1.13
CD44-207ENST00000425428 LRRC37A5PQ49AS3 106 aa8□□□□□ -1.13
CD44-207ENST00000425428 AKIRIN2Q53H80 203 aa8□□□□□ -1.13
CD44-207ENST00000425428 TMEM65Q6PI78 240 aa8□□□□□ -1.13
CD44-207ENST00000425428 CENPVQ7Z7K6 275 aaPredicted RBP8□□□□□ -1.13
CD44-207ENST00000425428 ZC4H2Q9NQZ6 224 aa8□□□□□ -1.13
CD44-207ENST00000425428 NDUFA4L2Q9NRX3 87 aa8□□□□□ -1.13
CD44-207ENST00000425428 HSPB7Q9UBY9 170 aa8□□□□□ -1.13
CD44-207ENST00000425428 PAIP2BQ9ULR5 123 aaKnown RBP8□□□□□ -1.13
CD44-207ENST00000425428 U3KQ87 197 aa8□□□□□ -1.13
CD44-207ENST00000425428 MXRA5Q9NR99 2828 aa8□□□□□ -1.13
CD44-207ENST00000425428 FN1P02751 2386 aaKnown RBP8□□□□□ -1.13
CD44-207ENST00000425428 SVEP1Q4LDE5 3571 aa8□□□□□ -1.13
CD44-207ENST00000425428 CORTO00230 105 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 ATP6V0E1O15342 81 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 SSSCA1O60232 199 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 OR13C7P0DN81 318 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 CD83Q01151 205 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 Q6ZRM9 215 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 LFNGQ8NES3 379 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 OR4D5Q8NGN0 318 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 RBMXL1Q96E39 390 aaKnown RBP7.99□□□□□ -1.13
CD44-207ENST00000425428 RBKSQ9H477 322 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 SH2D7A6NKC9 451 aaPredicted RBP7.99□□□□□ -1.13
CD44-207ENST00000425428 MPTX1A8MV57 137 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 E5RGE8 158 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 PFDN1O60925 122 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 PITX3O75364 302 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 NDUFA7O95182 113 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 IGF1P05019 195 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 HIST1H1BP16401 226 aaKnown RBP7.99□□□□□ -1.13
CD44-207ENST00000425428 ID3Q02535 119 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 FOXL1Q12952 345 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 AARDQ4LEZ3 155 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 CXorf66Q5JRM2 361 aaPredicted RBP7.99□□□□□ -1.13
CD44-207ENST00000425428 COMMD1Q8N668 190 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 OR11H7Q8NGC8 314 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 PPP1R1CQ8WVI7 109 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 HSPB9Q9BQS6 159 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 FAM103A1Q9BTL3 118 aaKnown RBP7.99□□□□□ -1.13
CD44-207ENST00000425428 SLC25A31Q9H0C2 315 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 MAGT1Q9H0U3 335 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 PSENENQ9NZ42 101 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 ZNF580Q9UK33 172 aa7.99□□□□□ -1.13
CD44-207ENST00000425428 STRAPQ9Y3F4 350 aaKnown RBP7.99□□□□□ -1.13
CD44-207ENST00000425428 PSMB11A5LHX3 300 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 SCGB2A1O75556 95 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 MBPP02686 304 aaPredicted RBP7.98□□□□□ -1.13
CD44-207ENST00000425428 AMY1AP04745 511 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 OR8U8P0C7N1 319 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 IAPPP10997 89 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 CXCL3P19876 107 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 CAV2P51636 162 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 H2BFSP57053 126 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 TAS2R30P59541 319 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 POLR2GP62487 172 aaKnown RBP eCLIP7.98□□□□□ -1.13
CD44-207ENST00000425428 RAB32Q13637 225 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 C2orf68Q2NKX9 166 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 PDLIM3Q53GG5 364 aaPredicted RBP7.98□□□□□ -1.13
CD44-207ENST00000425428 FBLN7Q53RD9 439 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 SPINK9Q5DT21 86 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 STX12Q86Y82 276 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 STPG2Q8N412 459 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 INO80EQ8NBZ0 244 aaPredicted RBP7.98□□□□□ -1.13
CD44-207ENST00000425428 OR4X2Q8NGF9 303 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 OR2T35Q8NGX2 323 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 ZNF702PQ9H963 129 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 WSB1Q9Y6I7 421 aa7.98□□□□□ -1.13
CD44-207ENST00000425428 NPIPB5A8MRT5 1133 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 H3BUA1 57 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 K7EPK0 472 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 MPC2O95563 127 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 IFNA4P05014 189 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 APELAP0DMC3 54 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 SPANXN5Q5MJ07 72 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 C10orf55Q5SWW7 151 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 ETFRF1Q6IPR1 90 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 SLC25A24Q6NUK1 477 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 TEX38Q6PEX7 206 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 Q6ZSV7 163 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 Q8N2B8 174 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 TTC9CQ8N5M4 171 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 SLC24A4Q8NFF2 622 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 OR5T1Q8NG75 326 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 SMIM8Q96KF7 97 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 C16orf95Q9H693 158 aa7.97□□□□□ -1.13
CD44-207ENST00000425428 RCL1Q9Y2P8 373 aaKnown RBP7.97□□□□□ -1.13
CD44-207ENST00000425428 RPS10-NUDT3A0A1W2PQS6 291 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms