RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 CR1P17927 2039 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 TRAV20A0A0B4J274 112 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 IGHV1-69DA0A0B4J2H0 117 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 IGHV1-69P01742 117 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 ATP6V0CP27449 155 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 RUNX1Q01196 453 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 LOXL1Q08397 574 aaPredicted RBP11.25□□□□□ -0.61
GPNMB-203ENST00000409458 HNF4GQ14541 408 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 MMDQ15546 238 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 EIF5AL1Q6IS14 154 aaKnown RBP11.25□□□□□ -0.61
GPNMB-203ENST00000409458 LINC01356Q8N9X3 169 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 OR10P1Q8NGE3 313 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 OR10W1Q8NGF6 305 aa11.25□□□□□ -0.61
GPNMB-203ENST00000409458 UBE2L5PA0A1B0GUS4 154 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 LINC00862A6NCI5 91 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 NBR2O15453 112 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 FAM157CP0CG43 387 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 IGHV4-38-2P0DP08 117 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 NPY1RP25929 384 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 HES1Q14469 280 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 PPP1R27Q86WC6 154 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 MMD2Q8IY49 270 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 OR2T10Q8NGZ9 312 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 PINX1Q96BK5 328 aaKnown RBP11.24□□□□□ -0.61
GPNMB-203ENST00000409458 Q96MF0 132 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 REG4Q9BYZ8 158 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 C7orf69Q9H7B7 122 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 PRSS46E5RG02 174 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 FGF16O43320 207 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 NDUFA3O95167 84 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 CA2P00918 260 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 IFNA5P01569 189 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 SEC11BP0C7V7 166 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 TNXAQ16473 311 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 FAM120AOSQ5T036 256 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 SLC25A24Q6NUK1 477 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 ETV3LQ6ZN32 361 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 Q8N6K4 173 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 NPBQ8NG41 125 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 RNF141Q8WVD5 230 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 TMEM147Q9BVK8 224 aa11.24□□□□□ -0.61
GPNMB-203ENST00000409458 A0A1W2PN81 502 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 INS-IGF2F8WCM5 200 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 AVPP01185 164 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 CHRNA7P36544 502 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 SULT1A2P50226 295 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 GNB1P62873 340 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 SSBP2P81877 361 aaPredicted RBP11.23□□□□□ -0.61
GPNMB-203ENST00000409458 WT1-ASQ06250 92 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 EBI3Q14213 229 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 PLGLAQ15195 96 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 ATP6V1FQ16864 119 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 VWC2Q2TAL6 325 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 LRRC75BQ2VPJ9 315 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 BSXQ3C1V8 233 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 PRSS57Q6UWY2 283 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 BRD3OSQ6XYD6 125 aa11.23□□□□□ -0.61
GPNMB-203ENST00000409458 WDR61Q9GZS3 305 aaKnown RBP11.23□□□□□ -0.61
GPNMB-203ENST00000409458 FCN1O00602 326 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 SCAF4O95104 1147 aaKnown RBP11.22□□□□□ -0.61
GPNMB-203ENST00000409458 IFNA4P05014 189 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 IGHV4-31P0DP07 118 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 RNASE2P10153 161 aaKnown RBP11.22□□□□□ -0.61
GPNMB-203ENST00000409458 TMEM11P17152 192 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 GATA3P23771 443 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 MAS1LP35410 378 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 RPL27AP46776 148 aaKnown RBP11.22□□□□□ -0.61
GPNMB-203ENST00000409458 COMPP49747 757 aaPredicted RBP11.22□□□□□ -0.61
GPNMB-203ENST00000409458 RAB11AP62491 216 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 TMEM182Q6ZP80 229 aaPredicted RBP11.22□□□□□ -0.61
GPNMB-203ENST00000409458 OR2G3Q8NGZ4 309 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 RSG1Q9BU20 258 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 PARD6GQ9BYG4 376 aaPredicted RBP11.22□□□□□ -0.61
GPNMB-203ENST00000409458 UQCC1Q9NVA1 299 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 KIAA1456Q9P272 454 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 CSMD1Q96PZ7 3565 aa11.22□□□□□ -0.61
GPNMB-203ENST00000409458 ZNF705EA8MWA4 302 aaPredicted RBP11.21□□□□□ -0.61
GPNMB-203ENST00000409458 TEX46H3BTG2 121 aa11.21□□□□□ -0.61
GPNMB-203ENST00000409458 ACTL6BO94805 426 aa11.21□□□□□ -0.61
GPNMB-203ENST00000409458 TUSC1Q2TAM9 212 aa11.21□□□□□ -0.61
GPNMB-203ENST00000409458 COMMD7Q86VX2 200 aa11.21□□□□□ -0.61
GPNMB-203ENST00000409458 LRRC20Q8TCA0 184 aa11.21□□□□□ -0.61
GPNMB-203ENST00000409458 SCGB1C1Q8TD33 95 aa11.21□□□□□ -0.61
GPNMB-203ENST00000409458 GNPNAT1Q96EK6 184 aaPredicted RBP11.21□□□□□ -0.61
GPNMB-203ENST00000409458 NAV2Q8IVL1 2488 aa11.21□□□□□ -0.61
GPNMB-203ENST00000409458 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.21□□□□□ -0.62
GPNMB-203ENST00000409458 PLXNB1O43157 2135 aa11.21□□□□□ -0.62
GPNMB-203ENST00000409458 A0A0U1RQK1 487 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 IGLC7A0M8Q6 106 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 TEX22C9J3V5 150 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 REG1AP05451 166 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 FGF7P21781 194 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 ERHP84090 104 aaKnown RBP11.2□□□□□ -0.62
GPNMB-203ENST00000409458 C5orf64Q2M2E5 130 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 TMEM249Q2WGJ8 235 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 C2orf83Q53S99 150 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 KLF17Q5JT82 389 aaPredicted RBP11.2□□□□□ -0.62
GPNMB-203ENST00000409458 TAF15Q92804 592 aaKnown RBP eCLIP11.2□□□□□ -0.62
GPNMB-203ENST00000409458 SOX21Q9Y651 276 aaPredicted RBP11.2□□□□□ -0.62
GPNMB-203ENST00000409458 ZFHX3Q15911 3703 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms