RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ARL17AQ8IVW1 177 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 TMEM105Q8N8V8 129 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 HSD17B10Q99714 261 aaKnown RBP10.06□□□□□ -0.8
HMGB1-206ENST00000405805 PCNX2A6NKB5 2137 aa10.06□□□□□ -0.8
HMGB1-206ENST00000405805 A0A1B0GWB2 263 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 IL3RAP26951 378 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 ADMP35318 185 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 CDKN1AP38936 164 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 SFTA2Q6UW10 78 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 RPP25LQ8N5L8 163 aaKnown RBP10.05□□□□□ -0.8
HMGB1-206ENST00000405805 OR2K2Q8NGT1 345 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 SGK494Q96LW2 274 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 NAPSAO96009 420 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 ZNF83P51522 516 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 MTURNQ8N3F0 131 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 H1FXQ92522 213 aaKnown RBP10.05□□□□□ -0.8
HMGB1-206ENST00000405805 SFRP2Q96HF1 295 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 CISD1Q9NZ45 108 aaKnown RBP10.05□□□□□ -0.8
HMGB1-206ENST00000405805 KBTBD11O94819 623 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 ACSF3Q4G176 576 aaPredicted RBP10.05□□□□□ -0.8
HMGB1-206ENST00000405805 NHLRC2Q8NBF2 726 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 WDYHV1Q96HA8 205 aa10.05□□□□□ -0.8
HMGB1-206ENST00000405805 OR4C46A6NHA9 309 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 SAP30O75446 220 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 FAM87AP0C7U9 286 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 C1QTNF9P0C862 333 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 PRB4P10163 310 aaPredicted RBP10.04□□□□□ -0.8
HMGB1-206ENST00000405805 MC5RP33032 325 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 FOXA3P55318 350 aaPredicted RBP10.04□□□□□ -0.8
HMGB1-206ENST00000405805 RPL23P62829 140 aaKnown RBP10.04□□□□□ -0.8
HMGB1-206ENST00000405805 PAX2Q02962 417 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 NMSQ5H8A3 153 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 ZNF48Q96MX3 618 aaPredicted RBP10.04□□□□□ -0.8
HMGB1-206ENST00000405805 JKAMPQ9P055 326 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 KLF13Q9Y2Y9 288 aaPredicted RBP10.04□□□□□ -0.8
HMGB1-206ENST00000405805 TNCP24821 2201 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.04□□□□□ -0.8
HMGB1-206ENST00000405805 CD1BP29016 333 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 LHX2P50458 406 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 TDRG1Q3Y452 100 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 LRTM2Q8N967 370 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 RND1Q92730 232 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 PRDM14Q9GZV8 571 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 ELOVL5Q9NYP7 299 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 M0R1B8 84 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 LEPROTL1O95214 131 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 GGNQ86UU5 652 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 OR10AG1Q8NH19 301 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 KCNS1Q96KK3 526 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 EGLN1Q9GZT9 426 aa10.04□□□□□ -0.8
HMGB1-206ENST00000405805 TRBV24-1A0A075B6N3 115 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 LY6G6EA0A0G2JKS1 128 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 IGKV1-5P01602 117 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 STAG3L2P0CL84 134 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 PSG5Q15238 335 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 FAM201AQ5SY85 155 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 STXBP6Q8NFX7 210 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 OR1B1Q8NGR6 318 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 PERPQ96FX8 193 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 GEMIN7Q9H840 131 aaKnown RBP10.03□□□□□ -0.8
HMGB1-206ENST00000405805 SS18L2Q9UHA2 77 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 U3KQA8 63 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 EML6Q6ZMW3 1958 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 TMEM265A0A087WTH1 108 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 IGLV3-32A0A0A0MS00 114 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 MUC21A0A0G2JKD1 596 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 MUC21A0A140T8X8 626 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 ESDP10768 282 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 SOX8P57073 446 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 MUC21Q5SSG8 566 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 OR4S2Q8NH73 311 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 OR5P3Q8WZ94 311 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 C1QTNF5Q9BXJ0 243 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 ANAPC10Q9UM13 185 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 MRPS18CQ9Y3D5 142 aaKnown RBP10.03□□□□□ -0.8
HMGB1-206ENST00000405805 C12orf77C9JDV5 145 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 TSPOP30536 169 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 Q1RN00 199 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 LRRC75BQ2VPJ9 315 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 ZNF718Q3SXZ3 478 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 BOD1L2Q8IYS8 172 aa10.03□□□□□ -0.8
HMGB1-206ENST00000405805 PPIAL4EA0A075B759 164 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 ARL14EPLP0DKL9 152 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 PPIAL4FP0DN26 164 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 CA7P43166 264 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 FAM162BQ5T6X4 162 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 FBXW9Q5XUX1 488 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 RBMXL3Q8N7X1 1067 aaKnown RBP10.02□□□□□ -0.8
HMGB1-206ENST00000405805 ZC2HC1AQ96GY0 325 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 FER1L6-AS2Q96M78 137 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 SEPSECSQ9HD40 501 aaKnown RBP10.02□□□□□ -0.8
HMGB1-206ENST00000405805 PLSCR2Q9NRY7 297 aa10.02□□□□□ -0.8
HMGB1-206ENST00000405805 VSTM5A8MXK1 200 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 CORTO00230 105 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 GALR2O43603 387 aaPredicted RBP10.02□□□□□ -0.81
HMGB1-206ENST00000405805 PLAUP00749 431 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 FAM90A2PQ658T7 463 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 TAAR6Q96RI8 345 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 DNPH1O43598 174 aa10.02□□□□□ -0.81
HMGB1-206ENST00000405805 REG1BP48304 166 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms