RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 G6PCP35575 357 aa21.76■■□□□ 1.07
HMGB1-205ENST00000399494 AP3S2P59780 193 aa21.76■■□□□ 1.07
HMGB1-205ENST00000399494 ZNF79Q15937 498 aa21.76■■□□□ 1.07
HMGB1-205ENST00000399494 OR51S1Q8NGJ8 323 aa21.76■■□□□ 1.07
HMGB1-205ENST00000399494 COMMD5Q9GZQ3 224 aa21.76■■□□□ 1.07
HMGB1-205ENST00000399494 RANGRFQ9HD47 186 aaPredicted RBP21.76■■□□□ 1.07
HMGB1-205ENST00000399494 SERPINE2P07093 398 aa21.75■■□□□ 1.07
HMGB1-205ENST00000399494 FAUP35544 74 aaKnown RBP21.75■■□□□ 1.07
HMGB1-205ENST00000399494 SCP2D1Q9UJQ7 156 aa21.75■■□□□ 1.07
HMGB1-205ENST00000399494 DNAH1Q9P2D7 4330 aa21.75■■□□□ 1.07
HMGB1-205ENST00000399494 STARD9Q9P2P6 4700 aa21.74■■□□□ 1.07
HMGB1-205ENST00000399494 TRAV3A0A0B4J244 114 aa21.74■■□□□ 1.07
HMGB1-205ENST00000399494 C13orf42A0A1B0GVH6 325 aa21.74■■□□□ 1.07
HMGB1-205ENST00000399494 HMX3A6NHT5 357 aa21.74■■□□□ 1.07
HMGB1-205ENST00000399494 CTSDP07339 412 aaPredicted RBP21.74■■□□□ 1.07
HMGB1-205ENST00000399494 SURF2Q15527 256 aaPredicted RBP21.74■■□□□ 1.07
HMGB1-205ENST00000399494 SLC25A42Q86VD7 318 aa21.74■■□□□ 1.07
HMGB1-205ENST00000399494 TOMM5Q8N4H5 51 aa21.74■■□□□ 1.07
HMGB1-205ENST00000399494 ADAD2Q8NCV1 583 aaKnown RBP21.74■■□□□ 1.07
HMGB1-205ENST00000399494 EPPK1P58107 5090 aaKnown RBP21.73■■□□□ 1.07
HMGB1-205ENST00000399494 A0A0G2JLM5 398 aa21.73■■□□□ 1.07
HMGB1-205ENST00000399494 SNAPC5O75971 98 aa21.73■■□□□ 1.07
HMGB1-205ENST00000399494 MYOD1P15172 320 aa21.73■■□□□ 1.07
HMGB1-205ENST00000399494 ETV6P41212 452 aa21.73■■□□□ 1.07
HMGB1-205ENST00000399494 KLF5Q13887 457 aaPredicted RBP21.73■■□□□ 1.07
HMGB1-205ENST00000399494 SGPP2Q8IWX5 399 aa21.73■■□□□ 1.07
HMGB1-205ENST00000399494 TRIM63Q969Q1 353 aa21.73■■□□□ 1.07
HMGB1-205ENST00000399494 MRGPRFQ96AM1 343 aa21.73■■□□□ 1.07
HMGB1-205ENST00000399494 C3orf85A0A1B0GTC6 90 aa21.72■■□□□ 1.07
HMGB1-205ENST00000399494 TEX22C9J3V5 150 aa21.72■■□□□ 1.07
HMGB1-205ENST00000399494 H0Y980 276 aa21.72■■□□□ 1.07
HMGB1-205ENST00000399494 IL6RP08887 468 aaPredicted RBP21.72■■□□□ 1.07
HMGB1-205ENST00000399494 ZP3P21754 424 aa21.72■■□□□ 1.07
HMGB1-205ENST00000399494 IL34Q6ZMJ4 242 aa21.72■■□□□ 1.07
HMGB1-205ENST00000399494 TTC9CQ8N5M4 171 aa21.72■■□□□ 1.07
HMGB1-205ENST00000399494 E7EUB6 86 aa21.71■■□□□ 1.07
HMGB1-205ENST00000399494 SLC2A8Q9NY64 477 aa21.71■■□□□ 1.07
HMGB1-205ENST00000399494 ZNF257Q9Y2Q1 563 aa21.71■■□□□ 1.07
HMGB1-205ENST00000399494 ANKRD34BA5PLL1 514 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 BRI3O95415 125 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 FGF2P09038 288 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 INPP1P49441 399 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 DEFA5Q01523 94 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 KLF9Q13886 244 aaPredicted RBP21.7■■□□□ 1.06
HMGB1-205ENST00000399494 H2BFWTQ7Z2G1 175 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 TP53RKQ96S44 253 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 TSC22D3Q99576 134 aa21.7■■□□□ 1.06
HMGB1-205ENST00000399494 TEX13DA0A0J9YY54 714 aaPredicted RBP21.69■■□□□ 1.06
HMGB1-205ENST00000399494 PRH1P02810 166 aa21.69■■□□□ 1.06
HMGB1-205ENST00000399494 OR2B8PP59922 312 aa21.69■■□□□ 1.06
HMGB1-205ENST00000399494 TRIM16LQ309B1 348 aa21.69■■□□□ 1.06
HMGB1-205ENST00000399494 USMG5Q96IX5 58 aa21.69■■□□□ 1.06
HMGB1-205ENST00000399494 SCGB3A2Q96PL1 93 aa21.69■■□□□ 1.06
HMGB1-205ENST00000399494 SRRQ9GZT4 340 aa21.69■■□□□ 1.06
HMGB1-205ENST00000399494 NSG2Q9Y328 171 aa21.69■■□□□ 1.06
HMGB1-205ENST00000399494 A0A1B0GW64 132 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 NPIPB5A8MRT5 1133 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 DHFRP00374 187 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 HAGHQ16775 308 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 ZNF57Q68EA5 555 aaPredicted RBP21.68■■□□□ 1.06
HMGB1-205ENST00000399494 CADM3Q8N126 398 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 OR9G4Q8NGQ1 327 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 SEC22AQ96IW7 307 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 SPATA25Q9BR10 227 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 RTBDNQ9BSG5 229 aaPredicted RBP21.68■■□□□ 1.06
HMGB1-205ENST00000399494 QTRT1Q9BXR0 403 aaKnown RBP21.68■■□□□ 1.06
HMGB1-205ENST00000399494 C5orf66Q9H5L9 145 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 PRNDQ9UKY0 176 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 GPR132Q9UNW8 380 aa21.68■■□□□ 1.06
HMGB1-205ENST00000399494 B3GALNT1O75752 331 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 ATG12O94817 140 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 IGKV1-39P01597 117 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 IGKV1D-39P04432 117 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 AREGP15514 252 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 RHOGP84095 191 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 SP6Q3SY56 376 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 TRIQKQ629K1 86 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 OR1L8Q8NGR8 309 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 HINT2Q9BX68 163 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 FKBP11Q9NYL4 201 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 OR51B2Q9Y5P1 312 aa21.67■■□□□ 1.06
HMGB1-205ENST00000399494 CGB1A6NKQ9 187 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 FAM223BA6NKX1 122 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 REG1AP05451 166 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 TRAPPC2P0DI81 140 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 TRAPPC2BP0DI82 140 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 PSMB6P28072 239 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 AKR1C2P52895 323 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 THOC7Q6I9Y2 204 aaKnown RBP21.66■■□□□ 1.06
HMGB1-205ENST00000399494 FAM223AQ8IWN6 122 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 GDPD1Q8N9F7 314 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 OR4A16Q8NH70 328 aa21.66■■□□□ 1.06
HMGB1-205ENST00000399494 TEX50A0A1B0GTY4 177 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 DEFA4P12838 97 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 SYNJ2BPP57105 145 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 ZNF45Q02386 682 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 ADAMTSL5Q6ZMM2 481 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 DEDD2Q8WXF8 326 aa21.65■■□□□ 1.06
HMGB1-205ENST00000399494 SRSF8Q9BRL6 282 aaKnown RBP21.65■■□□□ 1.06
HMGB1-205ENST00000399494 NAA60Q9H7X0 242 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms