RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 C9JAW5 83 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 F5H5P2 479 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 LGALS9O00182 355 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 SCO1O75880 301 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 GABARAPO95166 117 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 IGLV2-23P01705 113 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 CSN2P05814 226 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 CTSEP14091 401 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 PSMB3P49720 205 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 DEFA1P59665 94 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 RPS25P62851 125 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 PSG9Q00887 426 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 DAZ2Q13117 558 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 BTN1A1Q13410 526 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 TIMM50Q3ZCQ8 353 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 ABCA11PQ4W5N1 156 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 LDLRAD2Q5SZI1 272 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 IBA57Q5T440 356 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 IL34Q6ZMJ4 242 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 DAZ4Q86SG3 579 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF429Q86V71 674 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 MDP1Q86V88 176 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF615Q8N8J6 731 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM229BQ8NBD8 167 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 LY6G5BQ8NDX9 201 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF418Q8TF45 676 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 KLK6Q92876 244 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 YPEL4Q96NS1 127 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 PAXXQ9BUH6 204 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 TMEM147Q9BVK8 224 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 OR2H1Q9GZK4 316 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 EIF5A2Q9GZV4 153 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 PBOV1Q9GZY1 135 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 IFI27L2Q9H2X8 130 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF331Q9NQX6 463 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 DAZ1Q9NQZ3 744 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 DAZ3Q9NR90 486 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 METTL1Q9UBP6 276 aaKnown RBP2.94□□□□□ -1.94
HMGB1-204ENST00000399489 HIGD1AQ9Y241 93 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 HS3ST2Q9Y278 367 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 PXMP4Q9Y6I8 212 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 RTL1A6NKG5 1358 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 ABCC12Q96J65 1359 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 ADGRB1O14514 1584 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 TNS2Q63HR2 1409 aa2.94□□□□□ -1.94
HMGB1-204ENST00000399489 TRAV30A0A087WSZ9 112 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 TRAV8-1A0A0A6YYK1 113 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 TRAV38-1A0A0B4J264 116 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 A8MWP6 167 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 CCL25O15444 150 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 RBFOX2O43251 390 aaKnown RBP eCLIP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SRSF10O75494 262 aaKnown RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 PIAS1O75925 651 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 OR2H2O95918 312 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SOD3P08294 240 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF883P0CG24 379 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 DIO3P55073 304 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SNRPD2P62316 118 aaKnown RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 COL5A1-AS1Q5SY13 56 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 TCTE3Q8IZS6 198 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ANKRD29Q8N6D5 301 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF433Q8N7K0 673 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 NAT14Q8WUY8 206 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 CHAC1Q9BUX1 264 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF471Q9BX82 626 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 GFRA4Q9GZZ7 299 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 Q9H521 79 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 LHX9Q9NQ69 397 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 CA10Q9NS85 328 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 MCTS1Q9ULC4 181 aaKnown RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 PCYT1BQ9Y5K3 369 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 TRPM1Q7Z4N2 1603 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 CICQ96RK0 1608 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-204ENST00000399489 TMED7-TICAM2A0A0A6YYA0 188 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 IGKV6-21A0A0C4DH24 114 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 C4orf51C9J302 202 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 H3BQF6 201 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 I3L521 148 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 J3QR89 54 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SCTP09683 121 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SMIM17P0DL12 118 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SCGB1C2P0DMR2 95 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 IMPA1P29218 277 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 LHX2P50458 406 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 RAB5CP51148 216 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 HERVK_113P63121 156 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 CDK6Q00534 326 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SCGB2B2Q4G0G5 96 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 C14orf177Q52M58 125 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 RASL11AQ6T310 242 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 MARCH3Q86UD3 253 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF584Q8IVC4 421 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 KRTCAP2Q8N6L1 136 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 DCAF4L2Q8NA75 395 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 LINC01555Q8NAE3 123 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ZNF555Q8NEP9 628 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 OR5A2Q8NGI9 324 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 SCGB1C1Q8TD33 95 aa2.93□□□□□ -1.94
HMGB1-204ENST00000399489 ADAT3Q96EY9 351 aaPredicted RBP2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms