RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PAXXQ9BUH6 204 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 RAB9BQ9NP90 201 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 BOKQ9UMX3 212 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-201ENST00000399429 ZDBF2Q9HCK1 2354 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 OOEPA6NGQ2 149 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 SH2D7A6NKC9 451 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-201ENST00000399429 H3BTX0 84 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 K7EP13 123 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 CD5LO43866 347 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 PLA2G5P39877 138 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 HBBP68871 147 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 TBR1Q16650 682 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 DCAF12Q5T6F0 453 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 ZNF257Q9Y2Q1 563 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 hCG_38984A0A1B0GV85 526 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 M0R296 226 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 MT-CO3P00414 261 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 IGHV3-48P01763 117 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 SUB1P53999 127 aaKnown RBP eCLIP7.83□□□□□ -1.16
COL28A1-201ENST00000399429 SLC35E4Q6ICL7 350 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 LYPD6Q86Y78 171 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 C5orf30Q96GV9 206 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 PNRC2Q9NPJ4 139 aaKnown RBP7.83□□□□□ -1.16
COL28A1-201ENST00000399429 FZR1Q9UM11 496 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 A0A1B0GWB2 263 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 A0A1W2PQF6 199 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 CYC1P08574 325 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 SSTR5P35346 364 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 CX3CL1P78423 397 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 SPATA31B1PQ5VZV4 182 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 TCF24Q7RTU0 167 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 SEPSECSQ9HD40 501 aaKnown RBP7.83□□□□□ -1.16
COL28A1-201ENST00000399429 HIF1ANQ9NWT6 349 aa7.83□□□□□ -1.16
COL28A1-201ENST00000399429 IGHV1OR21-1A0A087WYE8 117 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 LOC107984156A0A0G2JMH3 177 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 A0A1W2PRE2 83 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 IGFBP2P18065 325 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 SSPNQ14714 243 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 TMEM14EPQ6UXP3 125 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 ARL17AQ8IVW1 177 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 DECR2Q9NUI1 292 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 PAPPA2Q9BXP8 1791 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 WNK2Q9Y3S1 2297 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 IGLC7A0M8Q6 106 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 PGPA6NDG6 321 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 J3QR06 171 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 EFNA2O43921 213 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 CYB561P49447 251 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 SEC11AP67812 179 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 WFDC3Q8IUB2 231 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 OR2M7Q8NG81 312 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 OSTCQ9NRP0 149 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 PPIAL4EA0A075B759 164 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 LMO7DNF2Z398 122 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 SLC25A17O43808 307 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 NDUFB8O95169 186 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 PPIAL4FP0DN26 164 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 ZNF138P52744 262 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 ALKBH6Q3KRA9 238 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 C10orf113Q5VZT2 155 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 WDR83OSQ9Y284 106 aa7.82□□□□□ -1.16
COL28A1-201ENST00000399429 FER1L5A0AVI2 2057 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 LOC105371242A0A075B767 164 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 PPIAL4CA0A0B4J2A2 164 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 TMPRSS2O15393 492 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 SYNGR3O43761 229 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 APOHP02749 345 aaPredicted RBP7.81□□□□□ -1.16
COL28A1-201ENST00000399429 C8orf88P0DMB2 117 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 PPIAL4GP0DN37 164 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 LINC00696Q6ZRV3 163 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 KCNE4Q8WWG9 221 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 STRADBQ9C0K7 418 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 TCF19Q9Y242 345 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 LSM4Q9Y4Z0 139 aaKnown RBP7.81□□□□□ -1.16
COL28A1-201ENST00000399429 FOXH1O75593 365 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 STAG3L2P0CL84 134 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 STAG3L3P0CL85 134 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 RIGQ13278 110 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 EFNB3Q15768 340 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 C10orf128Q5T292 105 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 WFDC12Q8WWY7 111 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 CNOT1A5YKK6 2376 aaKnown RBP7.81□□□□□ -1.16
COL28A1-201ENST00000399429 PLXNB3Q9ULL4 1909 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 CELA2AP08217 269 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 ASPHD1Q5U4P2 390 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 Q6ZS52 159 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 C18orf32Q8TCD1 76 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 MMP17Q9ULZ9 603 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 WDR87Q6ZQQ6 2873 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 USF3Q68DE3 2245 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 SYS1-DBNDD2H3BUS1 97 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 CD27P26842 260 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 LPAL2Q16609 132 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 PRNTQ86SH4 94 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 LINC00596Q86U02 117 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 OR5A1Q8NGJ0 315 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 C18orf15Q96N68 181 aa7.81□□□□□ -1.16
COL28A1-201ENST00000399429 SF3B5Q9BWJ5 86 aaKnown RBP7.81□□□□□ -1.16
COL28A1-201ENST00000399429 NHP2Q9NX24 153 aaKnown RBP7.81□□□□□ -1.16
COL28A1-201ENST00000399429 TRIOBPQ9H2D6 2365 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms