RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FXYD3Q14802 87 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 LY6EQ16553 131 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 ETV3LQ6ZN32 361 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 SMIM8Q96KF7 97 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 NUDT15Q9NV35 164 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 RBM7Q9Y580 266 aaKnown RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 OR51B2Q9Y5P1 312 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 FAM240BA0A1B0GVZ2 78 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 I3L2K1 104 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 MFAP2P55001 183 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 RPL23AP62750 156 aaKnown RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 TNFRSF9Q07011 255 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 KPRPQ5T749 579 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 GGNBP1Q5YKI7 109 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 TEX38Q6PEX7 206 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 LYZL2Q7Z4W2 148 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 C22orf15Q8WYQ4 148 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 GPHA2Q96T91 129 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 PHB2Q99623 299 aa5.45□□□□□ -1.54
LIMA1-202ENST00000394943 PARD6GQ9BYG4 376 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-202ENST00000394943 INMT-MINDY4F8WBC2 141 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 H7C2Y5 167 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 RNASE2P10153 161 aaKnown RBP5.44□□□□□ -1.54
LIMA1-202ENST00000394943 PI3P19957 117 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 INPP1P49441 399 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 PAX9P55771 341 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 RGS21Q2M5E4 152 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM268Q5VZI3 342 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 H2BFWTQ7Z2G1 175 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 RNASEH2CQ8TDP1 164 aaKnown RBP5.44□□□□□ -1.54
LIMA1-202ENST00000394943 TSC22D2O75157 780 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 MRPL41Q8IXM3 137 aaKnown RBP5.44□□□□□ -1.54
LIMA1-202ENST00000394943 KLHDC1Q8N7A1 406 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 ZBTB8BQ8NAP8 495 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-202ENST00000394943 MDFIQ99750 246 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 GPN1Q9HCN4 374 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-202ENST00000394943 TSSC4Q9Y5U2 329 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-202ENST00000394943 DNHD1Q96M86 4753 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 PSMB11A5LHX3 300 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 LGALS9O00182 355 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 CORTO00230 105 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 SLC35B1P78383 322 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM14EPQ6UXP3 125 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 REC114Q7Z4M0 266 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 ZNF695Q8IW36 515 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 C12orf45Q8N5I9 185 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-202ENST00000394943 C2orf50Q96LR7 162 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 P2RX4Q99571 388 aa5.44□□□□□ -1.54
LIMA1-202ENST00000394943 MFSD2BA6NFX1 497 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 CRYBA1P05813 215 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 GPX4P36969 197 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-202ENST00000394943 RAB9AP51151 201 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 EXOSC2Q13868 293 aaKnown RBP5.43□□□□□ -1.54
LIMA1-202ENST00000394943 DMBX1Q8NFW5 382 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 ZNF502Q8TBZ5 544 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 ENKURQ8TC29 256 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 GGACTQ9BVM4 153 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 G3V3Q6 166 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 K7EIM0 57 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 OPN1MWP04001 364 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 OPN1MW2P0DN77 364 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 OPN1MW3P0DN78 364 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 HES1Q14469 280 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 SP6Q3SY56 376 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 PLET1Q6UQ28 207 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 VKORC1L1Q8N0U8 176 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 THAP8Q8NA92 274 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 NECAP1Q8NC96 275 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 RCL1Q9Y2P8 373 aaKnown RBP5.43□□□□□ -1.54
LIMA1-202ENST00000394943 WSB1Q9Y6I7 421 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 U3KQ87 197 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 TRBV7-1A0A0A6YYK4 115 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 RBMXL2O75526 392 aaKnown RBP5.43□□□□□ -1.54
LIMA1-202ENST00000394943 MED6O75586 246 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 DHFRP00374 187 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 LGALS1P09382 135 aaKnown RBP5.43□□□□□ -1.54
LIMA1-202ENST00000394943 C8orf88P0DMB2 117 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 AKR1C4P17516 323 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 MYCNOSP40205 109 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 HTR2BP41595 481 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 C2orf68Q2NKX9 166 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 OR10C1Q96KK4 312 aa5.43□□□□□ -1.54
LIMA1-202ENST00000394943 CIB3Q96Q77 187 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-202ENST00000394943 MSGN1A6NI15 193 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 NCBP2LA6PVI3 153 aaKnown RBP5.42□□□□□ -1.54
LIMA1-202ENST00000394943 A8MWP6 167 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 SLC25A4P12235 298 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM116Q8NCL8 245 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 SEC22CQ9BRL7 303 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 CCDC168Q8NDH2 2452 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 NAV3Q8IVL0 2385 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 HIVEP2P31629 2446 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 C15orf62A8K5M9 175 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 TATDN3Q17R31 274 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 CACNG8Q8WXS5 425 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 NOL4LQ96MY1 436 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-202ENST00000394943 RBKSQ9H477 322 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 MGAT4CQ9UBM8 478 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 CACNG5Q9UF02 275 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 ALG5Q9Y673 324 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms