RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 FAM168AQ92567 244 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 COQ2Q96H96 371 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 NPVFQ9HCQ7 196 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 M0R2Z0 102 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 AMY1AP04745 511 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 CYB561P49447 251 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 ZNF146Q15072 292 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 OR1C1Q15619 314 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 IBA57Q5T440 356 aaKnown RBP13.13□□□□□ -0.31
CKAP4-201ENST00000378026 RNASEKQ6P5S7 137 aaKnown RBP13.13□□□□□ -0.31
CKAP4-201ENST00000378026 GCNT2Q8N0V5 402 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 OBP2BQ9NPH6 170 aa13.13□□□□□ -0.31
CKAP4-201ENST00000378026 GFRA3O60609 400 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 TNFSF4P23510 183 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 CHODLQ9H9P2 273 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 ZNF331Q9NQX6 463 aaPredicted RBP13.12□□□□□ -0.31
CKAP4-201ENST00000378026 MYOD1P15172 320 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 GPR12P47775 334 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 RPL39P5Q59GN2 51 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 EBLN2Q6P2I7 272 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 TEPPQ6URK8 271 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 Q8IYB0 196 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 Q8TCH9 128 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 SSBP4Q9BWG4 385 aaPredicted RBP13.12□□□□□ -0.31
CKAP4-201ENST00000378026 LINC00470Q9BZP3 86 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 PLEKHA3Q9HB20 300 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 CEP192Q8TEP8 1941 aa13.12□□□□□ -0.31
CKAP4-201ENST00000378026 M0R1X1 148 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 TOMM40O96008 361 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 KIR3DL3Q8N743 410 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 SLC24A4Q8NFF2 622 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 C18orf32Q8TCD1 76 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 LINC00479Q96M42 142 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 GP6Q9HCN6 339 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 PMCHL1Q16048 86 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 TET2Q6N021 2002 aaPredicted RBP13.11□□□□□ -0.31
CKAP4-201ENST00000378026 MOB3BQ86TA1 216 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 CLEC5AQ9NY25 188 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 SAA2-SAA4A0A096LPE2 208 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 IGHV2-26A0A0B4J1V2 119 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 PROP1O75360 226 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 RPL8P62917 257 aaKnown RBP13.11□□□□□ -0.31
CKAP4-201ENST00000378026 LDLRAD2Q5SZI1 272 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 CDX2Q99626 313 aaPredicted RBP13.11□□□□□ -0.31
CKAP4-201ENST00000378026 GNG12Q9UBI6 72 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 MRPS16Q9Y3D3 137 aaKnown RBP13.11□□□□□ -0.31
CKAP4-201ENST00000378026 LOXL2Q9Y4K0 774 aa13.11□□□□□ -0.31
CKAP4-201ENST00000378026 TNRC6BQ9UPQ9 1833 aaKnown RBP13.1□□□□□ -0.31
CKAP4-201ENST00000378026 K7EP13 123 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 HLA-DQA1P01909 254 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 CAMPP49913 170 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 C19orf35Q6ZS72 473 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 C11orf52Q96A22 123 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 TECRQ9NZ01 308 aaKnown RBP13.1□□□□□ -0.31
CKAP4-201ENST00000378026 IL19Q9UHD0 177 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 IGKV3D-15A0A087WSY6 115 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 A0A1W2PN81 502 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 SH2D7A6NKC9 451 aaPredicted RBP13.1□□□□□ -0.31
CKAP4-201ENST00000378026 MAGEA5P43359 124 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 VDAC2P45880 294 aaPredicted RBP13.1□□□□□ -0.31
CKAP4-201ENST00000378026 MPV17L2Q567V2 206 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 TCF19Q9Y242 345 aa13.1□□□□□ -0.31
CKAP4-201ENST00000378026 TRAV9-2A0A087WT02 112 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 IGHV2-70DA0A0C4DH43 119 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 PRSS46E5RG02 174 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 MMP23AO75900 390 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 SRFP11831 508 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 DUTP33316 252 aaKnown RBP13.09□□□□□ -0.31
CKAP4-201ENST00000378026 MFAP2P55001 183 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 ERVK-16P61578 105 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 PRR27Q6MZM9 219 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 DUSP23Q9BVJ7 150 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 FZR1Q9UM11 496 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 IGLC7A0M8Q6 106 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 FAM181BA6NEQ2 426 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 SPATA12Q7Z6I5 190 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 SLC25A40Q8TBP6 338 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 NEUROG1Q92886 237 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 ZNF355PQ9NSJ1 428 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 WASHC3Q9Y3C0 194 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 DSPP15924 2871 aaKnown RBP13.09□□□□□ -0.31
CKAP4-201ENST00000378026 IL11RAQ14626 422 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 OR4F17Q8NGA8 305 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 TMEM140Q9NV12 185 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 LSM4Q9Y4Z0 139 aaKnown RBP13.09□□□□□ -0.31
CKAP4-201ENST00000378026 SELENOKQ9Y6D0 94 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 ARL2-SNX15V9GYD0 113 aa13.09□□□□□ -0.31
CKAP4-201ENST00000378026 SELENOVP59797 346 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 RAB31Q13636 194 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 LEAP2Q969E1 77 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 OSTCQ9NRP0 149 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 GGTLC3B5MD39 225 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 PSG1P11464 419 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 CD24P25063 80 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 SLC35E4Q6ICL7 350 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 SPACA3Q8IXA5 215 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 ZNF596Q8TC21 504 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 TIMM8BQ9Y5J9 83 aaPredicted RBP13.08□□□□□ -0.32
CKAP4-201ENST00000378026 TNCP24821 2201 aa13.08□□□□□ -0.32
CKAP4-201ENST00000378026 IGHV1-69-2A0A0G2JMI3 117 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms