RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 CLDN16Q9Y5I7 305 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 CDX4O14627 284 aaPredicted RBP5.49□□□□□ -1.53
SMC1A-202ENST00000375340 MGPP08493 103 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 CECR9P0C854 216 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 VSTM2AQ8TAG5 236 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 INSIG2Q9Y5U4 225 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 GNG7O60262 68 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 MPDU1O75352 247 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 ANOS1P23352 680 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 Q1RN00 199 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM170AQ8WVE7 144 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 GRAMD2BQ96HH9 432 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 PGPA6NDG6 321 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 SNAI2O43623 268 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 DMRTA1Q5VZB9 504 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 ZNF841Q6ZN19 808 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 JPT1Q9UK76 154 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 PRSS1P07477 247 aa5.49□□□□□ -1.53
SMC1A-202ENST00000375340 A0A0G2JRQ6 117 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 PRR33A8MZF0 331 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 PSG7Q13046 419 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 DNLZQ5SXM8 178 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 CYP2G1PQ6ZSU1 146 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 UQCR10Q9UDW1 63 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 WDR87Q6ZQQ6 2873 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 AMBPP02760 352 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 RELBQ01201 579 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 RAB37Q96AX2 223 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 SMIM17P0DL12 118 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 MMDQ15546 238 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 SNRNP40Q96DI7 357 aaKnown RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 MRPL20Q9BYC9 149 aaKnown RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 COLQQ9Y215 455 aaPredicted RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 IGKV3-7A0A075B6H7 116 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 IGHV2OR16-5A0A0B4J2B6 119 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 CA1P00915 261 aaPredicted RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 CD3EP07766 207 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 HSPE1P61604 102 aaKnown RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 DNAJC4Q9NNZ3 241 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 PPIAL4EA0A075B759 164 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM189A5PLL7 270 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 PPIAL4DF5H284 164 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 PPIAL4FP0DN26 164 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 MAS1LP35410 378 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 HERPUD1Q15011 391 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 ACSF3Q4G176 576 aaPredicted RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 ASCL5Q7RTU5 278 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 PPIAL4AQ9Y536 164 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 FER1L5A0AVI2 2057 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 F5H697 171 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 HLA-DQA1P01909 254 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 FAM87AP0C7U9 286 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 ARF6P62330 175 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 LEMD1Q68G75 181 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 FAM216BQ8N7L0 139 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 RNF166Q96A37 237 aaPredicted RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 VENTXO95231 258 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 S100A4P26447 101 aaKnown RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 LBHQ53QV2 105 aaPredicted RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 ACTL10Q5JWF8 245 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 MRPL37Q9BZE1 423 aaKnown RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 A0A1B0GUS0 222 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 MYOD1P15172 320 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 COMPP49747 757 aaPredicted RBP5.48□□□□□ -1.53
SMC1A-202ENST00000375340 METRNQ9UJH8 293 aa5.48□□□□□ -1.53
SMC1A-202ENST00000375340 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 TRAV3A0A0B4J244 114 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 ZNF729A6NN14 1252 aaPredicted RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 IGKV1-5P01602 117 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 CSRP1P21291 193 aaKnown RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 FOXA3P55318 350 aaPredicted RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 RBM14Q96PK6 669 aaKnown RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM250H0YL14 139 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 SCGB1C2P0DMR2 95 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 RPL24P83731 157 aaKnown RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 COTL1Q14019 142 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 WDR82Q6UXN9 313 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 LRTM2Q8N967 370 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 LIME1Q9H400 295 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 LPAR2Q9HBW0 351 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 ROS1P08922 2347 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 A0A1B0GW64 132 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 C8orf88P0DMB2 117 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 GTF2H5Q6ZYL4 71 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 TMEM116Q8NCL8 245 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 NPIPB3Q92617 1050 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 CFPP27918 469 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 HSPB7Q9UBY9 170 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 EP300Q09472 2414 aaPredicted RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 IGHV3-66A0A0C4DH42 116 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 IQCF6A8MYZ5 107 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 KLF7O75840 302 aaPredicted RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 FTH1P19P0C7X4 201 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 CTSSP25774 331 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 RPL30P62888 115 aaKnown RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 PARD6GQ9BYG4 376 aaPredicted RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 DCAF16Q9NXF7 216 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 RIF1Q5UIP0 2472 aaKnown RBP5.47□□□□□ -1.53
SMC1A-202ENST00000375340 PCNX1Q96RV3 2341 aa5.47□□□□□ -1.53
SMC1A-202ENST00000375340 C16orf97H3BN30 126 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms