RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SPTA1P02549 2419 aa8.39□□□□□ -1.07
SYNE1-203ENST00000354674 IGKV1-12A0A0C4DH73 117 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 FOXI3A8MTJ6 420 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-203ENST00000354674 IFNA5P01569 189 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 IGKV1D-12P01611 117 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 GPM6AP51674 278 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 TCL1AP56279 114 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 MEF2BQ02080 365 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-203ENST00000354674 BSPH1Q075Z2 132 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 Q6ZR03 302 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 TGIF2LYQ8IUE0 185 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 CHODLQ9H9P2 273 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 PXMP4Q9Y6I8 212 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF732B4DXR9 585 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 TAX1BP3O14907 124 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 AADACP22760 399 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 CTRLP40313 264 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 FABP6P51161 128 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 RPL15P61313 204 aaKnown RBP8.38□□□□□ -1.07
SYNE1-203ENST00000354674 GNG3P63215 75 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF843Q8N446 348 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 OR10W1Q8NGF6 305 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 SRSF8Q9BRL6 282 aaKnown RBP8.38□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF442Q9H7R0 627 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 NAA60Q9H7X0 242 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 PLEKHF2Q9H8W4 249 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 ARL2-SNX15V9GYD0 113 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 PRR14LQ5THK1 2151 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 MLNRO43193 412 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 SPRY1O43609 319 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-203ENST00000354674 SERPINE2P07093 398 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 CD99P14209 185 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF90Q03938 601 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 SRSF7Q16629 238 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-203ENST00000354674 CYP2G1PQ6ZSU1 146 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 WDR86Q86TI4 376 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF695Q8IW36 515 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 OR10V1Q8NGI7 309 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 RAB37Q96AX2 223 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 PKIBQ9C010 78 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 HCFC1P51610 2035 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 CFAP46Q8IYW2 2715 aa8.38□□□□□ -1.07
SYNE1-203ENST00000354674 SERTM2A0A1B0GWG4 89 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 KBTBD11O94819 623 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 CLDN14O95500 239 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 MT-CO2P00403 227 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 TAS2R46P59540 309 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF611Q8N823 705 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 Q8N976 141 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 FER1L6-AS1Q8NA97 138 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 RTL8AQ9BWD3 113 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 GNB4Q9HAV0 340 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 ADGRG4Q8IZF6 3080 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 RP1L1Q8IWN7 2480 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-203ENST00000354674 DUXBA0A1W2PPF3 345 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 SNURFLB1AK76 121 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 SHISA9B4DS77 424 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 PPIAL4DF5H284 164 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 HAND1O96004 215 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 LOXP28300 417 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-203ENST00000354674 SRPXP78539 464 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 SHISA2Q6UWI4 295 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 LIAT1Q6ZQX7 453 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 ODF3L1Q8IXM7 274 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 GNPNAT1Q96EK6 184 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-203ENST00000354674 Q96M66 194 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 FZR1Q9UM11 496 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 PPP1R3CQ9UQK1 317 aa8.37□□□□□ -1.07
SYNE1-203ENST00000354674 TPRP12270 2363 aaKnown RBP8.37□□□□□ -1.07
SYNE1-203ENST00000354674 A0A087X0K7 114 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 IGLC7A0M8Q6 106 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 LRP5LA4QPB2 252 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 TIMM8AO60220 97 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-203ENST00000354674 NDUFB4O95168 129 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 WNT2P09544 360 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 MGST1P10620 155 aaKnown RBP8.36□□□□□ -1.07
SYNE1-203ENST00000354674 IGLL1P15814 213 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 TMEM177Q53S58 311 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 C5orf17Q8NAS9 161 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF439Q8NDP4 499 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 LINC01560Q8TB33 94 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 PMCHL2Q9BQD1 86 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 GAGE10A6NGK3 116 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 RBFOX2O43251 390 aaKnown RBP eCLIP8.36□□□□□ -1.07
SYNE1-203ENST00000354674 ZG16O60844 167 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 PITX3O75364 302 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 PRB1P04280 392 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 DAZAP2Q15038 168 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-203ENST00000354674 PMCHL1Q16048 86 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF788Q6ZQV5 615 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 MKXQ8IYA7 352 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 TCTEX1D1Q8N7M0 179 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 MTCH1Q9NZJ7 389 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 UBE2L5PA0A1B0GUS4 154 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 hDV102S1A0JD36 115 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 ZNF253O75346 499 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 NAPSAO96009 420 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 IGKV1D-33P01593 117 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 IGKV1-33P01594 117 aa8.36□□□□□ -1.07
SYNE1-203ENST00000354674 GPX1P07203 203 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms