RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 HES1Q14469 280 aa8.8□□□□□ -1
RTN3-204ENST00000354497 LINC01590Q5TEZ4 76 aa8.8□□□□□ -1
RTN3-204ENST00000354497 ZNF596Q8TC21 504 aa8.8□□□□□ -1
RTN3-204ENST00000354497 ISOC2Q96AB3 205 aa8.8□□□□□ -1
RTN3-204ENST00000354497 TMEM18Q96B42 140 aa8.8□□□□□ -1
RTN3-204ENST00000354497 TMEM56Q96MV1 263 aa8.8□□□□□ -1
RTN3-204ENST00000354497 FAAP24Q9BTP7 215 aa8.8□□□□□ -1
RTN3-204ENST00000354497 NMES1Q9C002 83 aa8.8□□□□□ -1
RTN3-204ENST00000354497 CHST6Q9GZX3 395 aa8.8□□□□□ -1
RTN3-204ENST00000354497 ZNF430Q9H8G1 570 aaPredicted RBP8.8□□□□□ -1
RTN3-204ENST00000354497 LINC00312Q9Y6C7 94 aa8.8□□□□□ -1
RTN3-204ENST00000354497 TMEM56-RWDD3S4R434 201 aa8.8□□□□□ -1
RTN3-204ENST00000354497 SERTM2A0A1B0GWG4 89 aa8.79□□□□□ -1
RTN3-204ENST00000354497 SMIM30A4D0T7 59 aa8.79□□□□□ -1
RTN3-204ENST00000354497 H0Y8G0 127 aa8.79□□□□□ -1
RTN3-204ENST00000354497 K7ERU9 68 aa8.79□□□□□ -1
RTN3-204ENST00000354497 CCL25O15444 150 aa8.79□□□□□ -1
RTN3-204ENST00000354497 FRMD6-AS1P0C7T7 363 aa8.79□□□□□ -1
RTN3-204ENST00000354497 TRGC1P0CF51 173 aa8.79□□□□□ -1
RTN3-204ENST00000354497 FAM106CPP0CH98 169 aa8.79□□□□□ -1
RTN3-204ENST00000354497 HTR1FP30939 366 aa8.79□□□□□ -1
RTN3-204ENST00000354497 SNCAP37840 140 aa8.79□□□□□ -1
RTN3-204ENST00000354497 CDC34P49427 236 aaPredicted RBP8.79□□□□□ -1
RTN3-204ENST00000354497 RAB7AP51149 207 aa8.79□□□□□ -1
RTN3-204ENST00000354497 FGF8P55075 233 aaPredicted RBP8.79□□□□□ -1
RTN3-204ENST00000354497 MADCAM1Q13477 382 aa8.79□□□□□ -1
RTN3-204ENST00000354497 ZNF674Q2M3X9 581 aa8.79□□□□□ -1
RTN3-204ENST00000354497 TPTE2P1Q5T6R2 138 aa8.79□□□□□ -1
RTN3-204ENST00000354497 SLC35E3Q7Z769 313 aa8.79□□□□□ -1
RTN3-204ENST00000354497 OR51E1Q8TCB6 317 aa8.79□□□□□ -1
RTN3-204ENST00000354497 S100A16Q96FQ6 103 aaKnown RBP8.79□□□□□ -1
RTN3-204ENST00000354497 SLC35E1Q96K37 410 aa8.79□□□□□ -1
RTN3-204ENST00000354497 SNX22Q96L94 193 aa8.79□□□□□ -1
RTN3-204ENST00000354497 HIPK2Q9H2X6 1198 aa8.79□□□□□ -1
RTN3-204ENST00000354497 AUNIPQ9H7T9 357 aa8.79□□□□□ -1
RTN3-204ENST00000354497 GPR84Q9NQS5 396 aa8.79□□□□□ -1
RTN3-204ENST00000354497 SLC2A8Q9NY64 477 aa8.79□□□□□ -1
RTN3-204ENST00000354497 H2AFY2Q9P0M6 372 aaPredicted RBP8.79□□□□□ -1
RTN3-204ENST00000354497 GSKIPQ9P0R6 139 aa8.79□□□□□ -1
RTN3-204ENST00000354497 A0A0B4J2A0 478 aa8.78□□□□□ -1
RTN3-204ENST00000354497 C9JQL5 133 aa8.78□□□□□ -1
RTN3-204ENST00000354497 M0R036 132 aa8.78□□□□□ -1
RTN3-204ENST00000354497 SOX15O60248 233 aa8.78□□□□□ -1
RTN3-204ENST00000354497 ZNF737O75373 536 aa8.78□□□□□ -1
RTN3-204ENST00000354497 AKAIN1P0CW23 69 aa8.78□□□□□ -1
RTN3-204ENST00000354497 RHOGP84095 191 aa8.78□□□□□ -1
RTN3-204ENST00000354497 PLECQ15149 4684 aaKnown RBP8.78□□□□□ -1
RTN3-204ENST00000354497 PRSS8Q16651 343 aa8.78□□□□□ -1
RTN3-204ENST00000354497 FAM27D1Q5T7N8 215 aa8.78□□□□□ -1
RTN3-204ENST00000354497 RTN4RL2Q86UN3 420 aa8.78□□□□□ -1
RTN3-204ENST00000354497 OR2T33Q8NG76 320 aa8.78□□□□□ -1
RTN3-204ENST00000354497 OR1P1Q8NH06 330 aa8.78□□□□□ -1
RTN3-204ENST00000354497 CD300LFQ8TDQ1 290 aa8.78□□□□□ -1
RTN3-204ENST00000354497 ABHD5Q8WTS1 349 aa8.78□□□□□ -1
RTN3-204ENST00000354497 CASTOR1Q8WTX7 329 aa8.78□□□□□ -1
RTN3-204ENST00000354497 MOB3AQ96BX8 217 aa8.78□□□□□ -1
RTN3-204ENST00000354497 TP53RKQ96S44 253 aa8.78□□□□□ -1
RTN3-204ENST00000354497 TMEM231Q9H6L2 316 aa8.78□□□□□ -1
RTN3-204ENST00000354497 HES4Q9HCC6 221 aa8.78□□□□□ -1
RTN3-204ENST00000354497 SHPKQ9UHJ6 478 aa8.78□□□□□ -1
RTN3-204ENST00000354497 NAGKQ9UJ70 344 aa8.78□□□□□ -1
RTN3-204ENST00000354497 HHLA2Q9UM44 414 aa8.78□□□□□ -1
RTN3-204ENST00000354497 KLHDC2Q9Y2U9 406 aa8.78□□□□□ -1
RTN3-204ENST00000354497 STRAPQ9Y3F4 350 aaKnown RBP8.78□□□□□ -1
RTN3-204ENST00000354497 HERC2O95714 4834 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 FAM230AA0A1W2PPH8 454 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 A6NIN4 97 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 UMAD1C9J7I0 102 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 F6UZH7 168 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 CYB5BO43169 146 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 ZBTB25P24278 435 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 CDK2P24941 298 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 GLIPR1P48060 266 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 SNU13P55769 128 aaKnown RBP8.77□□□□□ -1.01
RTN3-204ENST00000354497 ZNF616Q08AN1 781 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 GINS1Q14691 196 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 CXorf66Q5JRM2 361 aaPredicted RBP8.77□□□□□ -1.01
RTN3-204ENST00000354497 CCDC144NLQ6NUI1 221 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 TEX38Q6PEX7 206 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 GBGT1Q8N5D6 347 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 OR10G4Q8NGN3 311 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 OTOSQ8NHW6 89 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 PPP1R1CQ8WVI7 109 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 TOMM40LQ969M1 308 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 SLC25A38Q96DW6 304 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 VPS25Q9BRG1 176 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 PBOV1Q9GZY1 135 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 ARV1Q9H2C2 271 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 HRH4Q9H3N8 390 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 ZNF286AQ9HBT8 521 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 TVP23BQ9NYZ1 205 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 MRPL27Q9P0M9 148 aaKnown RBP8.77□□□□□ -1.01
RTN3-204ENST00000354497 CSMD3Q7Z407 3707 aa8.77□□□□□ -1.01
RTN3-204ENST00000354497 BUB1B-PAK6H3BSN5 160 aa8.76□□□□□ -1.01
RTN3-204ENST00000354497 HAND1O96004 215 aa8.76□□□□□ -1.01
RTN3-204ENST00000354497 UBE2MP61081 183 aaKnown RBP8.76□□□□□ -1.01
RTN3-204ENST00000354497 KIR2DS1Q14954 304 aa8.76□□□□□ -1.01
RTN3-204ENST00000354497 DMKNQ6E0U4 476 aaPredicted RBP8.76□□□□□ -1.01
RTN3-204ENST00000354497 IQCF1Q8N6M8 205 aa8.76□□□□□ -1.01
RTN3-204ENST00000354497 C5orf56Q8N8D9 126 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms