RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 C10orf55Q5SWW7 151 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 OR10X1Q8NGY0 326 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 ZNF714Q96N38 554 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 PLEKHA3Q9HB20 300 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 SIRT7Q9NRC8 400 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 SPTAN1Q13813 2472 aaKnown RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 A0A1W2PPQ1 181 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BKO60814 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HRASP01112 189 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BJP06899 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 SNRPCP09234 159 aaKnown RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BOP23527 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BBP33778 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BDP58876 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BCP62807 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST2H2BEQ16778 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 RTL8BQ17RB0 113 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 C3orf36Q3SXR2 165 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 FAM216AQ8WUB2 273 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 FRZBQ92765 325 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BHQ93079 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 NEIL1Q96FI4 390 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 C1orf159Q96HA4 380 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HARBI1Q96MB7 349 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BNQ99877 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 HIST1H2BMQ99879 126 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 TMEM106BQ9NUM4 274 aa8.45□□□□□ -1.06
LIMA1-201ENST00000341247 UTP20O75691 2785 aaKnown RBP8.45□□□□□ -1.06
LIMA1-201ENST00000341247 E7EQL1 145 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 IL6RP08887 468 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-201ENST00000341247 SLC25A48Q6ZT89 311 aaKnown RBP8.44□□□□□ -1.06
LIMA1-201ENST00000341247 STPG3Q8N7X2 389 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 MALSU1Q96EH3 234 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 RAB9BQ9NP90 201 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 ELOVL5Q9NYP7 299 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 METTL1Q9UBP6 276 aaKnown RBP8.44□□□□□ -1.06
LIMA1-201ENST00000341247 CTSZQ9UBR2 303 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 TMEM178BH3BS89 294 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 H7BYZ3 331 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 DVL1O14640 695 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 TEX36Q5VZQ5 186 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 CYP2G1PQ6ZSU1 146 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 RNASE6Q93091 150 aaKnown RBP8.44□□□□□ -1.06
LIMA1-201ENST00000341247 NPVFQ9HCQ7 196 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 TMEM14BQ9NUH8 114 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 PRSS46E5RG02 174 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 NDUFB3O43676 98 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 TRGC1P0CF51 173 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 GNB1P62873 340 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 OR52E5Q8NH55 327 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 MANBALQ9NQG1 85 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 LINC00312Q9Y6C7 94 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 ARHGAP32A7KAX9 2087 aa8.44□□□□□ -1.06
LIMA1-201ENST00000341247 B4DEV8 164 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 E7EUB6 86 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 ENSAO43768 121 aaKnown RBP8.43□□□□□ -1.06
LIMA1-201ENST00000341247 FAM3BP58499 235 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-201ENST00000341247 TEPPQ6URK8 271 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 OR4P4Q8NGL7 312 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 GAL3ST2Q9H3Q3 398 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 LY6HO94772 140 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 ZNF114Q8NC26 417 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 PCGF1Q9BSM1 259 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 FOXA2Q9Y261 457 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-201ENST00000341247 SSUH2Q9Y2M2 353 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 TEX50A0A1B0GTY4 177 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-201ENST00000341247 CXorf65A6NEN9 183 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 UPK2O00526 184 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 REG1AP05451 166 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 OPRK1P41145 380 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 GALR1P47211 349 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 LRRC10Q5BKY1 277 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 FAM78BQ5VT40 261 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 ACY3Q96HD9 319 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 ADTRPQ96IZ2 230 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 GPR61Q9BZJ8 451 aa8.43□□□□□ -1.06
LIMA1-201ENST00000341247 CFAP46Q8IYW2 2715 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 SCO2A0A1W2PP80 73 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 FAM90A9PA6NNJ1 464 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 SHISA9B4DS77 424 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 TMEM250H0YL14 139 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 C1QTNF9P0C862 333 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 MAS1LP35410 378 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-201ENST00000341247 IFITM10A6NMD0 228 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 K7ENP7 123 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 APOA2P02652 100 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 EFNB3Q15768 340 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 AARDQ4LEZ3 155 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 MIR17HGQ75NE6 70 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 OR9G1Q8NH87 305 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 OR5B12Q96R08 314 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 COMMD5Q9GZQ3 224 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 WNK2Q9Y3S1 2297 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 OR10A7Q8NGE5 316 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 RITA1Q96K30 269 aa8.42□□□□□ -1.06
LIMA1-201ENST00000341247 SEBOXQ9HB31 216 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-201ENST00000341247 PRNDQ9UKY0 176 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms