RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 C20orf78Q9BR46 151 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF256Q9Y2P7 627 aaPredicted RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 MPC1Q9Y5U8 109 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 ROBO1Q9Y6N7 1651 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 TRAV2A0A0B4J234 112 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 A0A0D9SEW6 157 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 A0A1B0GTH9 108 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 NPIPB13A6NJU9 1138 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 NPIPB4C9JG80 1138 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 CCDC179H3BU77 68 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 TNFRSF6BO95407 300 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 GATA3P23771 443 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 CXCL12P48061 93 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 MFAP2P55001 183 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 RPL18Q07020 188 aaKnown RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 RIGQ13278 110 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 HMGN2P46Q86SG4 172 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF740Q8NDX6 193 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 BORCS8Q96FH0 119 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 Q96M66 194 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 IGFLR1Q9H665 355 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 METRNQ9UJH8 293 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 HOXA3O43365 443 aaPredicted RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 HSPE1P61604 102 aaKnown RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 SRYQ05066 204 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 FHL1Q13642 323 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 KIAA1644Q3SXP7 199 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF474Q6S9Z5 364 aaPredicted RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 C2orf91Q6ZV80 131 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 OR5AS1Q8N127 324 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 C15orf53Q8NAA6 179 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF414Q96IQ9 312 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 SUSD3Q96L08 255 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 NHP2Q9NX24 153 aaKnown RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 IGLV1-36A0A0B4J1U3 117 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 DPM2O94777 84 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 FCGR2AP12318 317 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 GCHFRP30047 84 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 RPS15AP62244 130 aaKnown RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 CFAP126Q5VTH2 177 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 HSD11B1LQ7Z5J1 315 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 NEU4Q8WWR8 484 aaPredicted RBP3.46□□□□□ -1.86
NEDD4-201ENST00000338963 COQ2Q96H96 371 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 KLK14Q9P0G3 267 aa3.46□□□□□ -1.86
NEDD4-201ENST00000338963 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.45□□□□□ -1.86
NEDD4-201ENST00000338963 BGLAPP02818 100 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 SPANXN5Q5MJ07 72 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 SLC35E4Q6ICL7 350 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 PRSS3P2Q8NHM4 247 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 SCAMP5Q8TAC9 235 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 LRRC29Q8WV35 223 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 BADQ92934 168 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 C1QTNF5Q9BXJ0 243 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 LIME1Q9H400 295 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 WDR83OSQ9Y284 106 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 TRAV24A0A0B4J272 114 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 GP1BBP13224 206 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 PPIFP30405 207 aaKnown RBP3.45□□□□□ -1.86
NEDD4-201ENST00000338963 VWC2Q2TAL6 325 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 ZPLD1Q8TCW7 415 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 CACNG5Q9UF02 275 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 DENND4AQ7Z401 1863 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 TRACP01848 142 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 EGR1P18146 543 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 CFHR2P36980 270 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 COL9A2Q14055 689 aaPredicted RBP3.45□□□□□ -1.86
NEDD4-201ENST00000338963 WFDC2Q14508 124 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 WDR31Q8NA23 367 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 SSC4DQ8WTU2 575 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 RNF114Q9Y508 228 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 TRAV8-2A0A0B4J237 113 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 SHISA7A6NL88 538 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 NCBP2LA6PVI3 153 aaKnown RBP3.45□□□□□ -1.86
NEDD4-201ENST00000338963 MALP21145 153 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 COL8A1P27658 744 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 UBE2L3P68036 154 aaKnown RBP3.45□□□□□ -1.86
NEDD4-201ENST00000338963 TWIST1Q15672 202 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 LINC00596Q86U02 117 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 CEND1Q8N111 149 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 OSR2Q8N2R0 312 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 SLC37A2Q8TED4 501 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 TIMD4Q96H15 378 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 NUDT22Q9BRQ3 303 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 PROCRQ9UNN8 238 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 FAM90A9PA6NNJ1 464 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 LGALS1P09382 135 aaKnown RBP3.45□□□□□ -1.86
NEDD4-201ENST00000338963 MLST8Q9BVC4 326 aa3.45□□□□□ -1.86
NEDD4-201ENST00000338963 ABCA3Q99758 1704 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 A0A1W2PQF6 199 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 TCRBV4S1A1TA0A5B7 111 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 IAPPP10997 89 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 CNTFRP26992 372 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 NT5CQ8TCD5 201 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 UCN2Q96RP3 112 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF492Q9P255 531 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 NCR2O95944 276 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 NMUP48645 174 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 MEOX1P50221 254 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 KISS1Q15726 138 aa3.44□□□□□ -1.86
NEDD4-201ENST00000338963 CENPWQ5EE01 88 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms