RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 TBL2Q9Y4P3 447 aaKnown RBP12.43□□□□□ -0.42
LIMS1-202ENST00000338045 HILPDAQ9Y5L2 63 aa12.43□□□□□ -0.42
LIMS1-202ENST00000338045 INS-IGF2F8WCM5 200 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 OR8G2PQ6IF36 304 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 CCDC144NLQ6NUI1 221 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 TMEM170AQ8WVE7 144 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 GNPNAT1Q96EK6 184 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-202ENST00000338045 SAT2Q96F10 170 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-202ENST00000338045 ZNF430Q9H8G1 570 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-202ENST00000338045 NDUFA4L2Q9NRX3 87 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 BEX4Q9NWD9 120 aaPredicted RBP12.42□□□□□ -0.42
LIMS1-202ENST00000338045 PTPN13Q12923 2485 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 A0A1W2PRD5 423 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 A0A1W2PRF3 423 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 A0A1W2PRM7 423 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 IFNA10P01566 189 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 IFNA5P01569 189 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 MEOX2P50222 304 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 LGALS4P56470 323 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 PSG5Q15238 335 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 VWC2Q2TAL6 325 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 COMMD7Q86VX2 200 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 OR1L8Q8NGR8 309 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 COMMD5Q9GZQ3 224 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 PLEKHA3Q9HB20 300 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 ENY2Q9NPA8 101 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 TPSG1Q9NRR2 321 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 CELSR2Q9HCU4 2923 aa12.42□□□□□ -0.42
LIMS1-202ENST00000338045 A0A096LNT2 108 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 PRSS46E5RG02 174 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 RRHO14718 337 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 OR8U8P0C7N1 319 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 CNTFRP26992 372 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 RAB4BP61018 213 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 LRRC75BQ2VPJ9 315 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 LRRC75A-AS1Q8N1F1 130 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 DYNAPQ8N1N2 210 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 SLC24A4Q8NFF2 622 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 C1orf159Q96HA4 380 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 AJUBAQ96IF1 538 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 SIGLEC9Q9Y336 463 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 TENM4Q6N022 2769 aa12.41□□□□□ -0.42
LIMS1-202ENST00000338045 OPN1MWP04001 364 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 OPN1MW2P0DN77 364 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 OPN1MW3P0DN78 364 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 RAB5CP51148 216 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 SSX2Q16385 188 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 PRSS8Q16651 343 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 BSXQ3C1V8 233 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 MALSU1Q96EH3 234 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 TMEM147Q9BVK8 224 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 WDR61Q9GZS3 305 aaKnown RBP12.4□□□□□ -0.42
LIMS1-202ENST00000338045 CHTOPQ9Y3Y2 248 aaKnown RBP12.4□□□□□ -0.42
LIMS1-202ENST00000338045 VPS13CQ709C8 3753 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 CGB1A6NKQ9 187 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 ZNF705EA8MWA4 302 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-202ENST00000338045 E7EUB6 86 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 FABP1P07148 127 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 MSMBP08118 114 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 NPY1RP25929 384 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 ATP5IP56385 69 aaPredicted RBP12.4□□□□□ -0.42
LIMS1-202ENST00000338045 RUNX1Q01196 453 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 PJVKQ0ZLH3 352 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 DEFB113Q30KQ7 82 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 ETV3LQ6ZN32 361 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 MMD2Q8IY49 270 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 HINT2Q9BX68 163 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 REG4Q9BYZ8 158 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 UQCC1Q9NVA1 299 aa12.4□□□□□ -0.42
LIMS1-202ENST00000338045 MDKP21741 143 aaPredicted RBP12.39□□□□□ -0.43
LIMS1-202ENST00000338045 MAS1LP35410 378 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 F2RL1P55085 397 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 RAB11AP62491 216 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 EBI3Q14213 229 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 SLC25A24Q6NUK1 477 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 OR2G3Q8NGZ4 309 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 SCGB1C1Q8TD33 95 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 GGACTQ9BVM4 153 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 RFNGQ9Y644 331 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 CSMD2Q7Z408 3487 aa12.39□□□□□ -0.43
LIMS1-202ENST00000338045 CENPVL3A0A0U1RRI6 287 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 A0A1B0GW64 132 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 A0A1W2PN81 502 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 MFSD2BA6NFX1 497 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 B4DSR2 109 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 UMAD1C9J7I0 102 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 MOSP00540 346 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 CA2P00918 260 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 IGKV1D-33P01593 117 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 IGKV1-33P01594 117 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 SAA4P35542 130 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 CHRNA7P36544 502 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 C10orf55Q5SWW7 151 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 PPP1R27Q86WC6 154 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 NPBQ8NG41 125 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 OR10W1Q8NGF6 305 aa12.38□□□□□ -0.43
LIMS1-202ENST00000338045 TAF15Q92804 592 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIMS1-202ENST00000338045 EAF1Q96JC9 268 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-202ENST00000338045 PSMG3Q9BT73 122 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-202ENST00000338045 PARP11Q9NR21 331 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms