RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 HBG2P69892 147 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 NHLH2Q02577 135 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 KRTAP1-1Q07627 177 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 PJVKQ0ZLH3 352 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 TUSC1Q2TAM9 212 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 LRRC75BQ2VPJ9 315 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 SPANXN5Q5MJ07 72 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 PVRIGQ6DKI7 326 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 HAPLN4Q86UW8 402 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 MRPL41Q8IXM3 137 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 CIARTQ8N365 385 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 ZNF114Q8NC26 417 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 NANPQ8TBE9 248 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 ST8SIA2Q92186 375 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 BSCL2Q96G97 398 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 ZNF471Q9BX82 626 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 ENY2Q9NPA8 101 aa11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 HEYLQ9NQ87 328 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-202ENST00000334448 IGHV3OR16-10A0A075B7F0 116 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 IGLC7A0M8Q6 106 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 FGF16O43320 207 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 HLA-DRB1P01911 266 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 TPT1P13693 172 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 HTR2BP41595 481 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 HES1Q14469 280 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 ZNF266Q14584 549 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 ATP6V1FQ16864 119 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 SPINK9Q5DT21 86 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 FAM120AOSQ5T036 256 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 Q8N9W7 124 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 ZNF680Q8NEM1 530 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 SLC24A4Q8NFF2 622 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 OR1S2Q8NGQ3 325 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 OR5C1Q8NGR4 320 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 TMEM170AQ8WVE7 144 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 PINX1Q96BK5 328 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 GGACTQ9BVM4 153 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 PARD6GQ9BYG4 376 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 PRDM13Q9H4Q3 707 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 WFDC1Q9HC57 220 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 FAM96BQ9Y3D0 163 aa11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 FLNAP21333 2647 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-202ENST00000334448 TNCP24821 2201 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 BORCS7-ASMTA0A0B4J1R7 106 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 TEX22C9J3V5 150 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 PRSS46E5RG02 174 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 E7EUB6 86 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 CD5LO43866 347 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 CST7O76096 145 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 ACTL6BO94805 426 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 CFDP00746 253 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 IFNA7P01567 189 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 METTL15P1P0C7V9 234 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 CD24P25063 80 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 NPY1RP25929 384 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 ARL16Q0P5N6 197 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 TMEM267Q0VDI3 215 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 VWC2Q2TAL6 325 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 C2orf83Q53S99 150 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 C10orf55Q5SWW7 151 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 RPL7L1Q6DKI1 246 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 ZNF562Q6V9R5 426 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 BAP18Q8IXM2 172 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 RBM14Q96PK6 669 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 ATP5SQ99766 215 aa11.87□□□□□ -0.51
CCDC88C-202ENST00000334448 NOTCH2Q04721 2471 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 A6NDX4 124 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 FNDC10F2Z333 226 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 CA2P00918 260 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 RNASE2P10153 161 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 RAB11AP62491 216 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 ERHP84090 104 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 WT1-ASQ06250 92 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 SLC38A11Q08AI6 406 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 HNF4GQ14541 408 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 TNXAQ16473 311 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 C16orf82Q7Z2V1 217 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 SRSF12Q8WXF0 261 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 GINS3Q9BRX5 216 aa11.86□□□□□ -0.51
CCDC88C-202ENST00000334448 ABCA1O95477 2261 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 FCN1O00602 326 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 IFNA10P01566 189 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 OR8U8P0C7N1 319 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 EXOSC2Q13868 293 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 PLGLAQ15195 96 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 TMEM217Q8N7C4 229 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 OR10P1Q8NGE3 313 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 SCARB1Q8WTV0 552 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 SSX3Q99909 188 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 TMEM147Q9BVK8 224 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 HINT2Q9BX68 163 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 SMIM3Q9BZL3 60 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 PITPNC1Q9UKF7 332 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 MOB4Q9Y3A3 225 aa11.85□□□□□ -0.51
CCDC88C-202ENST00000334448 M0QZK8 103 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 OPN1MWP04001 364 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 OPN1MW2P0DN77 364 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 OPN1MW3P0DN78 364 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 DLK1P80370 383 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 CLINT1Q14677 625 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms