RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 PRCDQ00LT1 54 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 DIAPH2-AS1Q14236 149 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 CST9LP1Q5W188 147 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 TEPPQ6URK8 271 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 C16orf82Q7Z2V1 217 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 MOB3BQ86TA1 216 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 TEX50A0A1B0GTY4 177 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 TNFRSF13BO14836 293 aaPredicted RBP12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 LRRC10Q5BKY1 277 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 SSX8Q7RTT4 187 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 STPG3Q8N7X2 389 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 NECAP1Q8NC96 275 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 OR10A7Q8NGE5 316 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 VKORC1Q9BQB6 163 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 TMEM204Q9BSN7 226 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 NGBQ9NPG2 151 aa12.11□□□□□ -0.47
CLCNKA-201ENST00000331433 IGFBP2P18065 325 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 SPATA31B1PQ5VZV4 182 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 SPNS3Q6ZMD2 512 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 SLC16A13Q7RTY0 426 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 HARBI1Q96MB7 349 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 CTDSP1Q9GZU7 261 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 ZNF257Q9Y2Q1 563 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 H0YJW9 148 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 SOX15O60248 233 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 PLAUP00749 431 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 OR5T1Q8NG75 326 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 OR10W1Q8NGF6 305 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 OR10X1Q8NGY0 326 aa12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 SEPSECSQ9HD40 501 aaKnown RBP12.1□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BKO60814 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 APOA2P02652 100 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BJP06899 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 STAG3L2P0CL84 134 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 STAG3L3P0CL85 134 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BOP23527 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 LOXP28300 417 aaPredicted RBP12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 CHRNB4P30926 498 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BBP33778 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 NDUFA6P56556 154 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BDP58876 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BCP62807 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 GNB1P62873 340 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST2H2BEQ16778 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 LINC01560Q8TB33 94 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BHQ93079 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BNQ99877 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 HIST1H2BMQ99879 126 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 DERL1Q9BUN8 251 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 DOK5Q9P104 306 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 NAV3Q8IVL0 2385 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 PLXNB1O43157 2135 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 CLN5O75503 358 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 EFNB3Q15768 340 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 TMEM249Q2WGJ8 235 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 AURKAIP1Q9NWT8 199 aaPredicted RBP12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 BET1LQ9NYM9 111 aa12.09□□□□□ -0.47
CLCNKA-201ENST00000331433 TACC2O95359 2948 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 DCHS2Q6V1P9 2916 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 FAM90A27PA6NNH2 459 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 S100A8P05109 93 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 GRNP28799 593 aaKnown RBP12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 OR5AN1Q8NGI8 311 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 OSR1Q8TAX0 266 aaPredicted RBP12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 ELOVL1Q9BW60 279 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 TRBV24-1A0A075B6N3 115 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 IGHV1-69-2A0A0G2JMI3 117 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 LYNX1G3V0Z9 82 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 NDUFB4O95168 129 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 LYNX1P0DP58 116 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 MLANAQ16655 118 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 CLEC12BQ2HXU8 276 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 C4orf17Q53FE4 359 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 NANPQ8TBE9 248 aa12.08□□□□□ -0.48
CLCNKA-201ENST00000331433 MALRD1Q5VYJ5 2156 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 IGKV1OR2-108A0A075B7D4 117 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 H7BYZ3 331 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 PDE6DO43924 150 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 CXorf1O96002 111 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 CD3EP07766 207 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 APOBEC3AP31941 199 aaPredicted RBP12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 RAB31Q13636 194 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 FLYWCH2Q96CP2 140 aaKnown RBP12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 KCNIP2Q9NS61 270 aa12.07□□□□□ -0.48
CLCNKA-201ENST00000331433 E7EUB6 86 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 FOXH1O75593 365 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 PFN1P07737 140 aaKnown RBP12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 RPL29P47914 159 aaKnown RBP12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 DLX1P56177 255 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 OR5B3Q8NH48 314 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 FRZBQ92765 325 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 MSRB2Q9Y3D2 182 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 PGPEP1LA6NFU8 196 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 ACTL6BO94805 426 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 S100A9P06702 114 aaKnown RBP12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 SMIM6P0DI80 62 aa12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 GATA2P23769 480 aaPredicted RBP12.06□□□□□ -0.48
CLCNKA-201ENST00000331433 DLX6P56179 175 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms