RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 JMJD8Q96S16 334 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 PPIAL4EA0A075B759 164 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 PEX7O00628 323 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 PPIAL4FP0DN26 164 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 PPIAL4AQ9Y536 164 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 PROB1E7EW31 1015 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 OR2H2O95918 312 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 EVI2AP22794 236 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 C8orf82Q6P1X6 216 aaPredicted RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 TOMM7Q9P0U1 55 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 A0A0U1RRA0 63 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 TRAV8-4A0A0B4J246 113 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 MSGN1A6NI15 193 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 NKX2-8O15522 239 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 RPS20P60866 119 aaKnown RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 LINC00596Q86U02 117 aa6.76□□□□□ -1.33
CIITA-201ENST00000324288 ZNF48Q96MX3 618 aaPredicted RBP6.76□□□□□ -1.33
CIITA-201ENST00000324288 RPL8P62917 257 aaKnown RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 C10orf128Q5T292 105 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 PRELID3AQ96N28 172 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 LAMTOR2Q9Y2Q5 125 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 TRBV20OR9-2A0A075B6H5 130 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 ZFAND6Q6FIF0 208 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 FAM71F2Q6NXP2 309 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 VKORC1Q9BQB6 163 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 ARID2Q68CP9 1835 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 SF3B5Q9BWJ5 86 aaKnown RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 VWA8A3KMH1 1905 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 TRBV9A0A0B4J1U6 114 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 SERF1AO75920 110 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 ABHD12Q8N2K0 398 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 SF3B6Q9Y3B4 125 aaKnown RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 SYNGR3O43761 229 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 ZFP36L2P47974 494 aaKnown RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 COX14Q96I36 57 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 ZP1P60852 638 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 NFAM1Q8NET5 270 aaPredicted RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 GATAD1Q8WUU5 269 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 TMEM222Q9H0R3 208 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 SMDT1Q9H4I9 107 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 ADMP35318 185 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 TMEM187Q14656 261 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 LAMTOR1Q6IAA8 161 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 DMRTC2Q8IXT2 367 aaPredicted RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 ZNF721Q8TF20 911 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 TMEM101Q96IK0 257 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 LHFPL4Q7Z7J7 247 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 WFDC6Q9BQY6 131 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 TRAV2A0A0B4J234 112 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 TRBV7-9A0A0J9YWB2 115 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 PSG4Q00888 419 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 INO80CQ6PI98 192 aaPredicted RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 AQP3Q92482 292 aa6.75□□□□□ -1.33
CIITA-201ENST00000324288 SDHCQ99643 169 aaPredicted RBP6.75□□□□□ -1.33
CIITA-201ENST00000324288 PF4P02776 101 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 PEBP1P30086 187 aaKnown RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 RPS11P62280 158 aaKnown RBP eCLIP6.74□□□□□ -1.33
CIITA-201ENST00000324288 ICAM4Q14773 271 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 TPTE2P1Q5T6R2 138 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 PNKDQ8N490 385 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 RBBP6Q7Z6E9 1792 aaKnown RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 IL6RP08887 468 aaPredicted RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 FGFRL1Q8N441 504 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 DEFB104AQ8WTQ1 72 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 NABP2Q9BQ15 211 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 GP6Q9HCN6 339 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 NPC2P61916 151 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 AICDAQ9GZX7 198 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 RPP21Q9H633 154 aaKnown RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 QSER1Q2KHR3 1735 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 WNT9BO14905 357 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 LIPFP07098 398 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 ZNF645Q8N7E2 425 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 ITLN2Q8WWU7 325 aaPredicted RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 ALX4Q9H161 411 aaPredicted RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 IL36BQ9NZH7 164 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 A0A1W2PQM1 296 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 C19orf67A6NJJ6 358 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 FOXL1Q12952 345 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 TTC9CQ8N5M4 171 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 PRSS53Q2L4Q9 553 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 GLMPQ8WWB7 406 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 GATA2P23769 480 aaPredicted RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 WDR34Q96EX3 536 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 A0A1W2PRS3 328 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 PGPEP1LA6NFU8 196 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 GNG5P63218 68 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 MS4A5Q9H3V2 200 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 DPH3P1Q9H4G8 78 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 USP54Q70EL1 1684 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 ZG16O60844 167 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 CEACAM4O75871 244 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 SRP19P09132 144 aaKnown RBP6.74□□□□□ -1.33
CIITA-201ENST00000324288 C8orf88P0DMB2 117 aa6.74□□□□□ -1.33
CIITA-201ENST00000324288 ZBTB34Q8NCN2 500 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 C2orf88Q9BSF0 95 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 UCP2P55851 309 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 PAX2Q02962 417 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 RPL39P5Q59GN2 51 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 LINC01560Q8TB33 94 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms