RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CYTL1Q9NRR1 136 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 TMEM56-RWDD3S4R434 201 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 J3QRE1 110 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 CGAP01215 116 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 ACSF3Q4G176 576 aaPredicted RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 ATP1A1-AS1Q5TC04 95 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 MBNL2Q5VZF2 373 aaKnown RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 ZNF418Q8TF45 676 aaPredicted RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 C18orf12Q96KH6 178 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 TMEM208Q9BTX3 173 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 FBLN5Q9UBX5 448 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 ICE1Q9Y2F5 2266 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 MTCL1Q9Y4B5 1905 aaKnown RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 SDK2Q58EX2 2172 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 TRBV6-7A0A0A0MS04 114 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 TSPAN13O95857 204 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 ANOS1P23352 680 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 RELQ04864 619 aaPredicted RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 MRPL52Q86TS9 123 aaKnown RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 C10orf126Q8N4M7 172 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 TMUB1Q9BVT8 246 aa9.75□□□□□ -0.85
VPS39-201ENST00000318006 FNDC4Q9H6D8 234 aaPredicted RBP9.75□□□□□ -0.85
VPS39-201ENST00000318006 A0A1B0GW64 132 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 A0A1W2PRD5 423 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 A0A1W2PRF3 423 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 A0A1W2PRM7 423 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 CCL8P80075 99 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 ZNF146Q15072 292 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 TM4SF20Q53R12 229 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 TMEM160Q9NX00 188 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 PPIAL4EA0A075B759 164 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 ODAMA1E959 279 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 RFPL3SP0C7P2 107 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 C1QTNF9P0C862 333 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 PPIAL4FP0DN26 164 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 SFTPCP11686 197 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 HCP5Q6MZN7 132 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 PPIAL4AQ9Y536 164 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 IGLV3-12A0A075B6K2 115 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 GAS1P54826 345 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 PNKDQ8N490 385 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 WDR31Q8NA23 367 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 JPT1Q9UK76 154 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 HILPDAQ9Y5L2 63 aa9.74□□□□□ -0.85
VPS39-201ENST00000318006 CCL21O00585 134 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 OR2K2Q8NGT1 345 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 PRELID3AQ96N28 172 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 MRPL14Q6P1L8 145 aaKnown RBP9.73□□□□□ -0.85
VPS39-201ENST00000318006 GOLT1AQ6ZVE7 132 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 OR4X2Q8NGF9 303 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 OR4A5Q8NH83 315 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 SLX1AQ9BQ83 275 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 SLC25A10Q9UBX3 287 aaPredicted RBP9.73□□□□□ -0.85
VPS39-201ENST00000318006 THSD7BQ9C0I4 1608 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 OR10J3Q5JRS4 329 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 ZNF826PQ6ZT77 177 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 PRR7Q8TB68 274 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 IMMP1LQ96LU5 166 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 RAXQ9Y2V3 346 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 SPTBN2O15020 2390 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 IGKV1D-43A0A0B4J1Z2 117 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 NUDT10Q8NFP7 164 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 DIRC2Q96SL1 478 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 WFDC1Q9HC57 220 aa9.73□□□□□ -0.85
VPS39-201ENST00000318006 A0A1B0GUT8 65 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 MBD3L1Q8WWY6 194 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 LINC00470Q9BZP3 86 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 CALYQ9NYX4 217 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 PEX7O00628 323 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 ATP5LO75964 103 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 GPR6P46095 362 aaPredicted RBP9.72□□□□□ -0.85
VPS39-201ENST00000318006 SEC11AP67812 179 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 PSG9Q00887 426 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 PCSK4Q6UW60 755 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 C18orf15Q96N68 181 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 GFI1Q99684 422 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 TIMP4Q99727 224 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 ELOVL5Q9NYP7 299 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 GNB1LQ9BYB4 327 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 KLK15Q9H2R5 256 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 ZNF703Q9H7S9 590 aaPredicted RBP9.72□□□□□ -0.85
VPS39-201ENST00000318006 TYMSP04818 313 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 PTGDSP41222 190 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 ORAOV1Q8WV07 137 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 ITLN1Q8WWA0 313 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 NPIPB3Q92617 1050 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 CCL13Q99616 98 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 RPP21Q9H633 154 aaKnown RBP9.72□□□□□ -0.85
VPS39-201ENST00000318006 ST20Q9HBF5 79 aa9.72□□□□□ -0.85
VPS39-201ENST00000318006 BEX4Q9NWD9 120 aaPredicted RBP9.72□□□□□ -0.85
VPS39-201ENST00000318006 TRBV20OR9-2A0A075B6H5 130 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 A0A1B0GW15 77 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 CTSSP25774 331 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 KLRB1Q12918 225 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 KLF14Q8TD94 323 aaPredicted RBP9.71□□□□□ -0.85
VPS39-201ENST00000318006 SIGLEC12Q96PQ1 595 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 PGPEP1LA6NFU8 196 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 H3BTX0 84 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 FADS6Q8N9I5 356 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 CHODLQ9H9P2 273 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms