RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 hDV102S1A0JD36 115 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 PPICP45877 212 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 CLDN15P56746 228 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 SLC25A11Q02978 314 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 GUSBP1Q15486 140 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 CENPWQ5EE01 88 aa6.52□□□□□ -1.37
LIMCH1-201ENST00000313860 PXDNQ92626 1479 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 A0A0J9YWU9 116 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 GPX4P36969 197 aaPredicted RBP6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 P2RY2P41231 377 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 PMAIP1Q13794 54 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 LCN12Q6JVE5 192 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 TIMM17AQ99595 171 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 ADAMTS7Q9UKP4 1686 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 TRDCB7Z8K6 153 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 LYZL2Q7Z4W2 148 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 IFI27L1Q96BM0 104 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 WDYHV1Q96HA8 205 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 SIGLEC10Q96LC7 697 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 C17orf77Q96MU5 243 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 DPM3Q9P2X0 92 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 LY6G5CQ5SRR4 150 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 FER1L6-AS1Q8NA97 138 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 SMIM4Q8WVI0 70 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 MIXL1Q9H2W2 232 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 SDF2L1Q9HCN8 221 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 CCL28Q9NRJ3 127 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 PKD1L3Q7Z443 1732 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 APOBEC1P41238 236 aaKnown RBP6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 ZNF660Q6AZW8 331 aaPredicted RBP6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 RPRMLQ8N4K4 120 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 TPRX1Q8N7U7 411 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 NOXO1Q8NFA2 376 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV3-48P01763 117 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 CTSGP08311 255 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 SRD5A1P18405 259 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 CA7P43166 264 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 LOXL1Q08397 574 aaPredicted RBP6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 TRA2AQ13595 282 aaKnown RBP eCLIP6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 FAM106AQ4KMX7 169 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 CARD19Q96LW7 228 aa6.51□□□□□ -1.37
LIMCH1-201ENST00000313860 A0A087WV48 116 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 A0A087WX48 190 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 CD7P09564 240 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 GATA1P15976 413 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 FAM236AA0A1B0GUQ0 79 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 FAM236BA0A1B0GV22 79 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 NBR2O15453 112 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 SYT14P1Q58G82 188 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 UNQ9370/PRO34162Q6UXP9 181 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 DTX1Q86Y01 620 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 C1QL4Q86Z23 238 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 TIAM2Q8IVF5 1701 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 FAM231BA6NCW3 169 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 COX7A2LO14548 114 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 PPIFP30405 207 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 PFN2P35080 140 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 FOXE3Q13461 319 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 COX20Q5RI15 118 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 SPANXDQ9BXN6 97 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 NEU3Q9UQ49 428 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 MARF1Q9Y4F3 1742 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 SSBP1Q04837 148 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 ATP5G2Q06055 141 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 APCDD1LQ8NCL9 501 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 PLA2G2FQ9BZM2 168 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 A0A1B0GTH9 108 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 SMIM18P0DKX4 95 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 UBE2AP49459 152 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 MESP2Q0VG99 397 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 CFHR5Q9BXR6 569 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 LIME1Q9H400 295 aa6.5□□□□□ -1.37
LIMCH1-201ENST00000313860 IGHV1-24A0A0C4DH33 117 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 Q8NFD4 153 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 DIP2CQ9Y2E4 1556 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 S4R3C0 116 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 C22orf46C9J442 243 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 NDUFB1O75438 58 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 C1QL3Q5VWW1 255 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 ISCA2Q86U28 154 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 ZCCHC24Q8N2G6 241 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 DRAM1Q8N682 238 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 SLC25A43Q8WUT9 341 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 ENTPD2Q9Y5L3 495 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 WNT10BO00744 389 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 NXPH4O95158 308 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 C10orf105Q8TEF2 133 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 SERP1Q9Y6X1 66 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 KLF5Q13887 457 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 ICAM4Q14773 271 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 GFRALQ6UXV0 394 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 TEN1Q86WV5 123 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 TP53INP2Q8IXH6 220 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 LAT2Q9GZY6 243 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 MYO18AQ92614 2054 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 CXCL13O43927 109 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 SIGLEC15Q6ZMC9 328 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 PRIMA1Q86XR5 153 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 C9orf62Q8N4C0 152 aa6.49□□□□□ -1.37
LIMCH1-201ENST00000313860 A4D1N5 150 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms