RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 NINJ1Q92982 152 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 CHRDL1Q9BU40 450 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 SEPSECSQ9HD40 501 aaKnown RBP9.13□□□□□ -0.95
LSM3-201ENST00000306024 IL36BQ9NZH7 164 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 TRAPPC2LQ9UL33 140 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.13□□□□□ -0.95
LSM3-201ENST00000306024 A0A0U1RQV5 110 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 DEGS1O15121 323 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 PRDX4Q13162 271 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 ZNF324BQ6AW86 544 aaPredicted RBP9.13□□□□□ -0.95
LSM3-201ENST00000306024 FGFBP3Q8TAT2 258 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 NABP1Q96AH0 204 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 PPBPP02775 128 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 GNG4P50150 75 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 PAX9P55771 341 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 RBM11P57052 281 aaKnown RBP9.13□□□□□ -0.95
LSM3-201ENST00000306024 SAMD13Q5VXD3 122 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 ZNF808Q8N4W9 903 aaPredicted RBP9.13□□□□□ -0.95
LSM3-201ENST00000306024 DECR2Q9NUI1 292 aa9.13□□□□□ -0.95
LSM3-201ENST00000306024 MRPS16Q9Y3D3 137 aaKnown RBP9.13□□□□□ -0.95
LSM3-201ENST00000306024 CHTOPQ9Y3Y2 248 aaKnown RBP9.13□□□□□ -0.95
LSM3-201ENST00000306024 LOC105371242A0A075B767 164 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 OR2T8A6NH00 312 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 APCSP02743 223 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 BMI1P35226 326 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 FAM27E3Q08E93 113 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 SLC25A34Q6PIV7 304 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 PNKDQ8N490 385 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 LYZL4Q96KX0 146 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 FZR1Q9UM11 496 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 MGAQ8IWI9 3026 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 TRAV9-2A0A087WT02 112 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 UQCRFS1P47985 274 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 PRRX1P54821 245 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 GNB1P62873 340 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 FXYD3Q14802 87 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 ZNF718Q3SXZ3 478 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 KCNIP2Q9NS61 270 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 PLCE1Q9P212 2302 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 AKAP13Q12802 2813 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 MBD3L4A6NDZ8 208 aaPredicted RBP9.12□□□□□ -0.95
LSM3-201ENST00000306024 MBD3L3A6NE82 208 aaPredicted RBP9.12□□□□□ -0.95
LSM3-201ENST00000306024 MBD3L5A6NJ08 208 aaPredicted RBP9.12□□□□□ -0.95
LSM3-201ENST00000306024 MBD3L2Q8NHZ7 208 aaPredicted RBP9.12□□□□□ -0.95
LSM3-201ENST00000306024 HINT2Q9BX68 163 aa9.12□□□□□ -0.95
LSM3-201ENST00000306024 HEYLQ9NQ87 328 aaPredicted RBP9.12□□□□□ -0.95
LSM3-201ENST00000306024 PEF1Q9UBV8 284 aaKnown RBP9.12□□□□□ -0.95
LSM3-201ENST00000306024 A0A0G2JRQ6 117 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 SCO2A0A1W2PP80 73 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 TIMP3P35625 211 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 PLP1P60201 277 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 UBE2G1P62253 170 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 H2BFWTQ7Z2G1 175 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 OCC1Q8TAD7 63 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 ATP23Q9Y6H3 246 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 OR5B21A6NL26 309 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 SYNGR3O43761 229 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 CAMPP49913 170 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 TFF3Q07654 80 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 RAB31Q13636 194 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 OR2T6Q8NHC8 308 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 C10orf35Q96D05 121 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 ZNF391Q9UJN7 358 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 OR2W1Q9Y3N9 320 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 CELSR3Q9NYQ7 3312 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 FBLL1A6NHQ2 334 aaKnown RBP9.11□□□□□ -0.95
LSM3-201ENST00000306024 NGFP01138 241 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 IGKV1D-33P01593 117 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 IGKV1-33P01594 117 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 CCL1P22362 96 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 NRN1LQ496H8 165 aa9.11□□□□□ -0.95
LSM3-201ENST00000306024 HAND1O96004 215 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 CATR1Q13166 79 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 COX19Q49B96 90 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 Q8NA96 180 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 TIMM9Q9Y5J7 89 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 ANKHD1Q8IWZ3 2542 aaKnown RBP9.1□□□□□ -0.95
LSM3-201ENST00000306024 PCSK5Q92824 1860 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 A0A1B0GV72 72 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 NDUFS8O00217 210 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 TOMM40O96008 361 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 CA2P00918 260 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 SMIM21Q3B7S5 101 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 TMEM191AQ9H0A3 160 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 PLSCR4Q9NRQ2 329 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 FAM215AQ9Y5M1 114 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 COL27A1Q8IZC6 1860 aaPredicted RBP9.1□□□□□ -0.95
LSM3-201ENST00000306024 TRBV9A0A0B4J1U6 114 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 HLA-DQA1P01909 254 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 GRPP07492 148 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 YPEL3P61236 119 aaPredicted RBP9.1□□□□□ -0.95
LSM3-201ENST00000306024 OR8B2Q96RD0 313 aa9.1□□□□□ -0.95
LSM3-201ENST00000306024 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.1□□□□□ -0.95
LSM3-201ENST00000306024 E9PLN8 166 aa9.09□□□□□ -0.95
LSM3-201ENST00000306024 ACTL6BO94805 426 aa9.09□□□□□ -0.95
LSM3-201ENST00000306024 ARL14EPLP0DKL9 152 aa9.09□□□□□ -0.95
LSM3-201ENST00000306024 RPL31P62899 125 aaKnown RBP9.09□□□□□ -0.95
LSM3-201ENST00000306024 ZNF114Q8NC26 417 aa9.09□□□□□ -0.95
LSM3-201ENST00000306024 VKORC1Q9BQB6 163 aa9.09□□□□□ -0.95
LSM3-201ENST00000306024 DYNLRB1Q9NP97 96 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms