RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ADMP35318 185 aa10.9□□□□□ -0.66
CCDC88B-201ENST00000301897 RBMS2Q15434 407 aaKnown RBP10.9□□□□□ -0.66
CCDC88B-201ENST00000301897 BORCS5Q969J3 196 aa10.9□□□□□ -0.66
CCDC88B-201ENST00000301897 RARRES2Q99969 163 aa10.9□□□□□ -0.66
CCDC88B-201ENST00000301897 PLEKHA2Q9HB19 425 aa10.9□□□□□ -0.66
CCDC88B-201ENST00000301897 DNAH10Q8IVF4 4471 aa10.9□□□□□ -0.66
CCDC88B-201ENST00000301897 C15orf62A8K5M9 175 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 NOTOA8MTQ0 251 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 TNFSF12O43508 249 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 SERPINE2P07093 398 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 TRAPPC2P0DI81 140 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 TRAPPC2BP0DI82 140 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 OR13C7P0DN81 318 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 RPA2P15927 270 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 C22orf42Q6IC83 251 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 SLC25A24Q6NUK1 477 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 BEST4Q8NFU0 473 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 DMBX1Q8NFW5 382 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 OR13F1Q8NGS4 319 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 C11orf45Q8TAV5 145 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 GPHA2Q96T91 129 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 C20orf24Q9BUV8 137 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 TMEM140Q9NV12 185 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 C21orf62Q9NYP8 219 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 COMMD9Q9P000 198 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 BLOC1S6Q9UL45 172 aa10.89□□□□□ -0.67
CCDC88B-201ENST00000301897 SULT1C2O00338 296 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 SSX5O60225 188 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 CTSDP07339 412 aaPredicted RBP10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 FCGR2BP31994 310 aaPredicted RBP10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 FCGR2CP31995 323 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 ERVK-16P61578 105 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 OR1L8Q8NGR8 309 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 OR5B3Q8NH48 314 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 CMTM3Q96MX0 182 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 SLC5A7Q9GZV3 580 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 CCL28Q9NRJ3 127 aa10.88□□□□□ -0.67
CCDC88B-201ENST00000301897 MRPS14O60783 128 aaKnown RBP10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 S1PR2O95136 353 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 PPYP01298 95 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 CD5P06127 495 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 RELQ04864 619 aaPredicted RBP10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 TPRA1Q86W33 373 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 CADM3Q8N126 398 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 OR10W1Q8NGF6 305 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 C2CD4CQ8TF44 421 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 FBXL17Q9UF56 701 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 SMPXQ9UHP9 88 aa10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 F11RQ9Y624 299 aaKnown RBP10.87□□□□□ -0.67
CCDC88B-201ENST00000301897 TRAV3A0A0B4J244 114 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 SMIM30A4D0T7 59 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 FGF9P31371 208 aaPredicted RBP10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 NANOS2P60321 138 aaKnown RBP10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 PAFAH1B2P68402 229 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 WT1-ASQ06250 92 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 APRG1Q8IVJ8 170 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 OR11H2Q8NH07 326 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 LSM10Q969L4 123 aaKnown RBP10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 CHRDL1Q9BU40 450 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 NDUFA4L2Q9NRX3 87 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 RHBDL2Q9NX52 303 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 ETV7Q9Y603 341 aa10.86□□□□□ -0.67
CCDC88B-201ENST00000301897 A0A0A6YYH2 397 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 TEX50A0A1B0GTY4 177 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 A6NJ64 397 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 C11orf94C9JXX5 98 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 NUPL2O15504 423 aaKnown RBP10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 SCAND1P57086 179 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 Q56UQ5 140 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 AADACL3Q5VUY0 350 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 ZNF773Q6PK81 442 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 HOGA1Q86XE5 327 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 UBAC2Q8NBM4 344 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 TMEM116Q8NCL8 245 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 OR51H1Q8NH63 302 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 SCARB1Q8WTV0 552 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 GIMAP1Q8WWP7 306 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 RHPN1-AS1Q9BWJ2 59 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 DAPK2Q9UIK4 370 aa10.85□□□□□ -0.67
CCDC88B-201ENST00000301897 IGHV7-4-1A0A0J9YVY3 117 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 MARCH11A6NNE9 402 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 CHEK1O14757 476 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 ZNF207O43670 478 aaKnown RBP10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 SNAPC5O75971 98 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 CBX5P45973 191 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 FXYD4P59646 89 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 ZNF818PQ6ZRF7 136 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 LGALS14Q8TCE9 139 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 OR10C1Q96KK4 312 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 TMEM56Q96MV1 263 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 RNF2Q99496 336 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 HINT2Q9BX68 163 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 TXNL4BQ9NX01 149 aaKnown RBP10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 FKBP11Q9NYL4 201 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 PCLOQ9Y6V0 5065 aa10.84□□□□□ -0.67
CCDC88B-201ENST00000301897 IGHV3OR16-8A0A075B7F1 116 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 F8W735 103 aaPredicted RBP10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 K7EIM0 57 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 CTSGP08311 255 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 HSPA13P48723 471 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms