RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KHDC3LQ587J8 217 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 ARSJQ5FYB0 599 aaPredicted RBP9.33□□□□□ -0.92
CUX1-202ENST00000292538 MGST2Q99735 147 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 RAB1BQ9H0U4 201 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 NCOR1P1Q9H4R4 102 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 PRNDQ9UKY0 176 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 PXMP4Q9Y6I8 212 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 IGFBP2P18065 325 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 CNTFRP26992 372 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 PSMB3P49720 205 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 C19orf35Q6ZS72 473 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 OR9G1Q8NH87 305 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 UNKLQ9H9P5 680 aaKnown RBP9.33□□□□□ -0.92
CUX1-202ENST00000292538 HILPDAQ9Y5L2 63 aa9.33□□□□□ -0.92
CUX1-202ENST00000292538 IFNA1P01562 189 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 B2MP61769 119 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 RPL8P62917 257 aaKnown RBP9.32□□□□□ -0.92
CUX1-202ENST00000292538 ADIRFQ15847 76 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 TMEM155Q4W5P6 130 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 HCP5Q6MZN7 132 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 RBMS3Q6XE24 437 aaKnown RBP9.32□□□□□ -0.92
CUX1-202ENST00000292538 ZNF833PQ6ZTB9 187 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 PNKDQ8N490 385 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 OR51G1Q8NGK1 321 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 TMEM133Q9H2Q1 129 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 VAX2Q9UIW0 290 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 FOXA2Q9Y261 457 aaPredicted RBP9.32□□□□□ -0.92
CUX1-202ENST00000292538 WDR83OSQ9Y284 106 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 INSIG2Q9Y5U4 225 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 NAV3Q8IVL0 2385 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 CENPEQ02224 2701 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 DSCAML1Q8TD84 2053 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 TET2Q6N021 2002 aaPredicted RBP9.32□□□□□ -0.92
CUX1-202ENST00000292538 CTXND1A0A1B0GTU2 59 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 COLCA2A8K830 154 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 ITGB1BP1O14713 200 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 NECAP1Q8NC96 275 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 OR4C13Q8NGP0 309 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 FAM216AQ8WUB2 273 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 MBD3L1Q8WWY6 194 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 NPVFQ9HCQ7 196 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 VPS13CQ709C8 3753 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 FAM208BQ5VWN6 2430 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 CRYBG3Q68DQ2 2970 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 MBP02144 154 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 HNF1AP20823 631 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 RPL35P42766 123 aaKnown RBP9.32□□□□□ -0.92
CUX1-202ENST00000292538 PLGLAQ15195 96 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 OR8B3Q8NGG8 313 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 OR52E5Q8NH55 327 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 OR2T6Q8NHC8 308 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 TVP23CQ96ET8 276 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 OR8B2Q96RD0 313 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 NABP2Q9BQ15 211 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 SMIM7Q9BQ49 75 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 LINC00574Q9H8X3 128 aa9.32□□□□□ -0.92
CUX1-202ENST00000292538 FLNCQ14315 2725 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 TANC2Q9HCD6 1990 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 IGHV2-26A0A0B4J1V2 119 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 TNFRSF13BO14836 293 aaPredicted RBP9.31□□□□□ -0.92
CUX1-202ENST00000292538 NDUFA2O43678 99 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 SPATA31B1PQ5VZV4 182 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 TEPPQ6URK8 271 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 ABHD5Q8WTS1 349 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 HIST1H2BAQ96A08 127 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 SEPSECSQ9HD40 501 aaKnown RBP9.31□□□□□ -0.92
CUX1-202ENST00000292538 DOK5Q9P104 306 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 GAB2Q9UQC2 676 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 A0A1W2PPR1 153 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 FAM90A9PA6NNJ1 464 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 TSPAN9O75954 239 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 RPS10P46783 165 aaKnown RBP9.31□□□□□ -0.92
CUX1-202ENST00000292538 PPOXP50336 477 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 LGALS4P56470 323 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 MEF2BQ02080 365 aaPredicted RBP9.31□□□□□ -0.92
CUX1-202ENST00000292538 KLRD1Q13241 179 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 SLC35E3Q7Z769 313 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 LHFPL4Q7Z7J7 247 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 STPG3Q8N7X2 389 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 RPEQ96AT9 228 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 TMEM186Q96B77 213 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 TIMD4Q96H15 378 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 GGTLC1Q9BX51 225 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 ZNF430Q9H8G1 570 aaPredicted RBP9.31□□□□□ -0.92
CUX1-202ENST00000292538 WASHC3Q9Y3C0 194 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 TIMM9Q9Y5J7 89 aa9.31□□□□□ -0.92
CUX1-202ENST00000292538 FOXH1O75593 365 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 ARL14EPLP0DKL9 152 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 CD81P60033 236 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 TNXAQ16473 311 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 C11orf42Q8N5U0 333 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 OR5AN1Q8NGI8 311 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 LPAR2Q9HBW0 351 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 TRAV1-1A0A0B4J248 108 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 C11orf94C9JXX5 98 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 YIF1AO95070 293 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 IL6RP08887 468 aaPredicted RBP9.3□□□□□ -0.92
CUX1-202ENST00000292538 OPRK1P41145 380 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 ERHP84090 104 aaKnown RBP9.3□□□□□ -0.92
CUX1-202ENST00000292538 PRCDQ00LT1 54 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms