RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 MED13LQ71F56 2210 aa7.52□□□□□ -1.21
MSH4-201ENST00000263187 FCN1O00602 326 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 WNT2P09544 360 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 MGST1P10620 155 aaKnown RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 SRP14P37108 136 aaKnown RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 CDKN1AP38936 164 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 CASP6P55212 293 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 RPL15P61313 204 aaKnown RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 KRTCAP3Q53RY4 240 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 BAGE3Q86Y29 109 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 BAGE2Q86Y30 109 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 FAM216BQ8N7L0 139 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 ENY2Q9NPA8 101 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 RYDENQ9NUL5 291 aaKnown RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 CALYQ9NYX4 217 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 TP53TG5Q9Y2B4 290 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 COL27A1Q8IZC6 1860 aaPredicted RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 GCHFRP30047 84 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 VDAC2P45880 294 aaPredicted RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 LOXL3P58215 753 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 ACSF3Q4G176 576 aaPredicted RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 C22orf34Q6ZV56 151 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 ACY3Q96HD9 319 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 LINC00479Q96M42 142 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 KCNIP2Q9NS61 270 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 SH3BGRL2Q9UJC5 107 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 POLR3KQ9Y2Y1 108 aaPredicted RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 ABCA4P78363 2273 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 APC2O95996 2303 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 A6NNC1 897 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 SERF1AO75920 110 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 ADH4P08319 380 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 NPY1RP25929 384 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 VWC2Q2TAL6 325 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 MRPL54Q6P161 138 aaKnown RBP7.51□□□□□ -1.21
MSH4-201ENST00000263187 PQLC2Q6ZP29 291 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 OR1L6Q8NGR2 347 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 CMTM2Q8TAZ6 248 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 VN1R17PQ8TDU5 208 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 HSPB9Q9BQS6 159 aa7.51□□□□□ -1.21
MSH4-201ENST00000263187 DCHS2Q6V1P9 2916 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 TRAV5A0A0B4J249 113 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 VENTXO95231 258 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 CXorf1O96002 111 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 PLAUP00749 431 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 STAG3L2P0CL84 134 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 STAG3L3P0CL85 134 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 TRIP6Q15654 476 aaKnown RBP7.5□□□□□ -1.21
MSH4-201ENST00000263187 TEPPQ6URK8 271 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 BHLHA15Q7RTS1 189 aaPredicted RBP7.5□□□□□ -1.21
MSH4-201ENST00000263187 DEFB124Q8NES8 71 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 SLC24A4Q8NFF2 622 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 SNHG12Q9BXW3 62 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 SAMD10Q9BYL1 202 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 MRPL18Q9H0U6 180 aaKnown RBP7.5□□□□□ -1.21
MSH4-201ENST00000263187 SNURFLB1AK76 121 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 TCAPO15273 167 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 OPRK1P41145 380 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 TAS2R60P59551 318 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 CCL8P80075 99 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 MRPS11P82912 194 aaKnown RBP7.5□□□□□ -1.21
MSH4-201ENST00000263187 IQCJQ1A5X6 159 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 OR9G1Q8NH87 305 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 STARD4Q96DR4 205 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 NDUFAF3Q9BU61 184 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 SSBP3Q9BWW4 388 aaPredicted RBP7.5□□□□□ -1.21
MSH4-201ENST00000263187 NPVFQ9HCQ7 196 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 NAGKQ9UJ70 344 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 PROCRQ9UNN8 238 aa7.5□□□□□ -1.21
MSH4-201ENST00000263187 SRRM4A7MD48 611 aaKnown RBP7.49□□□□□ -1.21
MSH4-201ENST00000263187 GCGP01275 180 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 SUMO1P63165 101 aaKnown RBP7.49□□□□□ -1.21
MSH4-201ENST00000263187 RNASEH2CQ8TDP1 164 aaKnown RBP7.49□□□□□ -1.21
MSH4-201ENST00000263187 TP53TG3Q9ULZ0 132 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 OR51B2Q9Y5P1 312 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 BSNQ9UPA5 3926 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 ZGRF1Q86YA3 2104 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 MGST3O14880 152 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 CRISP2P16562 243 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 DLX1P56177 255 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 KRTDAPP60985 99 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 RPP30P78346 268 aaKnown RBP7.49□□□□□ -1.21
MSH4-201ENST00000263187 CENPWQ5EE01 88 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 Q6ZWC4 215 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 RNF114Q9Y508 228 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 CACNA1BQ00975 2339 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 IGKV1OR2-108A0A075B7D4 117 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 IGHV3-21A0A0B4J1V1 117 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 SRRM5B3KS81 715 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 J3QR06 171 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 TNFSF13O75888 250 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 PMCHP20382 165 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 OR10J1P30954 320 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 HTD2P86397 168 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 MORN5Q5VZ52 161 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 TMEM144Q7Z5S9 345 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 ST6GALNAC3Q8NDV1 305 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 OR2T6Q8NHC8 308 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 PRR7Q8TB68 274 aa7.49□□□□□ -1.21
MSH4-201ENST00000263187 UHRF2Q96PU4 802 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms