RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PARLQ9H300 379 aa16.17■□□□□ 0.18
UPF1-201ENST00000262803 CD69Q07108 199 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 LINC00305Q7Z4B0 112 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 HIST1H4GQ99525 98 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 ZNF236Q9UL36 1845 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 DUSP14O95147 198 aaKnown RBP16.16■□□□□ 0.18
UPF1-201ENST00000262803 DNLZQ5SXM8 178 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 CGB1A6NKQ9 187 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 SLC25A34Q6PIV7 304 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 REC114Q7Z4M0 266 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 SLC50A1Q9BRV3 221 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 CASP8AP2Q9UKL3 1982 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 IGKV3D-15A0A087WSY6 115 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 IGKV3-15P01624 115 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 GOLT1AQ6ZVE7 132 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 VKORC1L1Q8N0U8 176 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 TEX45Q8NA69 505 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 TNFRSF14Q92956 283 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 BRWD3Q6RI45 1802 aa16.16■□□□□ 0.18
UPF1-201ENST00000262803 E9PLN8 166 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 ATP5LO75964 103 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 CRYBB3P26998 211 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 VKORC1Q9BQB6 163 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 IL6RP08887 468 aaPredicted RBP16.15■□□□□ 0.18
UPF1-201ENST00000262803 LEMD1Q68G75 181 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 CIARTQ8N365 385 aaPredicted RBP16.15■□□□□ 0.18
UPF1-201ENST00000262803 KCNS1Q96KK3 526 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 AKIRIN1Q9H9L7 192 aaPredicted RBP16.15■□□□□ 0.18
UPF1-201ENST00000262803 RPRMQ9NS64 109 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 SMAD7O15105 426 aaKnown RBP16.15■□□□□ 0.18
UPF1-201ENST00000262803 LRTM2Q8N967 370 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 WDYHV1Q96HA8 205 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 IGLV3-32A0A0A0MS00 114 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 C12orf77C9JDV5 145 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 TCF23Q7RTU1 214 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 C7orf69Q9H7B7 122 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 SDF2L1Q9HCN8 221 aa16.15■□□□□ 0.18
UPF1-201ENST00000262803 FAM27E3Q08E93 113 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 TMEM183AQ8IXX5 376 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 REPIN1Q9BWE0 567 aaKnown RBP16.14■□□□□ 0.17
UPF1-201ENST00000262803 DNAL4O96015 105 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 IGKV1D-33P01593 117 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 IGKV1-33P01594 117 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 PVRIGQ6DKI7 326 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 GTF3AQ92664 365 aaKnown RBP16.14■□□□□ 0.17
UPF1-201ENST00000262803 SEMA5BQ9P283 1151 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 TRBV20OR9-2A0A075B6H5 130 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 A0A1B0GTI1 187 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 IL18BPO95998 194 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 LINC00518Q8N0U6 118 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 SPATA45Q537H7 98 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 FAM131CQ96AQ9 280 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 SFRP2Q96HF1 295 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 YAE1D1Q9NRH1 226 aa16.14■□□□□ 0.17
UPF1-201ENST00000262803 FOXI3A8MTJ6 420 aaPredicted RBP16.13■□□□□ 0.17
UPF1-201ENST00000262803 UCP1P25874 307 aa16.13■□□□□ 0.17
UPF1-201ENST00000262803 ZNF506Q5JVG8 444 aa16.13■□□□□ 0.17
UPF1-201ENST00000262803 VDAC2P45880 294 aaPredicted RBP16.13■□□□□ 0.17
UPF1-201ENST00000262803 SUMO2P61956 95 aaKnown RBP16.13■□□□□ 0.17
UPF1-201ENST00000262803 OR4D5Q8NGN0 318 aa16.13■□□□□ 0.17
UPF1-201ENST00000262803 RTBDNQ9BSG5 229 aaPredicted RBP16.13■□□□□ 0.17
UPF1-201ENST00000262803 TMEM262E9PQX1 116 aa16.13■□□□□ 0.17
UPF1-201ENST00000262803 REG1AP05451 166 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 CELA3AP09093 270 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 NBEAP1P0C6P0 100 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 IGFBP3P17936 291 aaPredicted RBP16.12■□□□□ 0.17
UPF1-201ENST00000262803 BTCP35070 178 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 LCN2P80188 198 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 ZNF646O15015 1829 aaPredicted RBP16.12■□□□□ 0.17
UPF1-201ENST00000262803 RNF222A6NCQ9 220 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 RCC1LQ96I51 464 aaKnown RBP16.12■□□□□ 0.17
UPF1-201ENST00000262803 WNK3Q9BYP7 1800 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 LINC00271P0C7V0 271 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 DUX3Q96PT4 197 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 ABCA7Q8IZY2 2146 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 FAM90A9PA6NNJ1 464 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 ZNRF1Q8ND25 227 aa16.12■□□□□ 0.17
UPF1-201ENST00000262803 MDC1Q14676 2089 aaKnown RBP16.11■□□□□ 0.17
UPF1-201ENST00000262803 GAGE10A6NGK3 116 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 OR11H12B2RN74 326 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 NBR2O15453 112 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 YPEL1O60688 119 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 SOD3P08294 240 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 IGHV1-2P23083 117 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 FAM74A4Q5TZK3 123 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 OR11H1Q8NG94 326 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 OR11H2Q8NH07 326 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 YPEL2Q96QA6 119 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 FAM166AQ6J272 317 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 LOC107984156A0A0G2JMH3 177 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 A8MXK9 166 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 EFNB1P98172 346 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 ARL17AQ8IVW1 177 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 NPCDR1Q9BY65 106 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 EGR1P18146 543 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 MBNL2Q5VZF2 373 aaKnown RBP16.11■□□□□ 0.17
UPF1-201ENST00000262803 FBXL15Q9H469 300 aa16.11■□□□□ 0.17
UPF1-201ENST00000262803 CARHSP1Q9Y2V2 147 aaKnown RBP16.11■□□□□ 0.17
UPF1-201ENST00000262803 METRNQ9UJH8 293 aa16.1■□□□□ 0.17
UPF1-201ENST00000262803 LINC01549A6NIU2 74 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms