RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 IFI27P40305 119 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TNFRSF9Q07011 255 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 FAAP20Q6NZ36 180 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM25Q86YD3 366 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SPNS2Q8IVW8 549 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CLECL1Q8IZS7 167 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 LINC01356Q8N9X3 169 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ABHD14BQ96IU4 210 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 IL25Q9H293 177 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 HINT3Q9NQE9 182 aaKnown RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 THAP10Q9P2Z0 257 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF257Q9Y2Q1 563 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMED7Q9Y3B3 224 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 IGHV1-69-2A0A0G2JMI3 117 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CD5LO43866 347 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 MPC2O95563 127 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF137PP52743 207 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 DCAF10Q5QP82 559 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C20orf196Q8IYI0 205 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ST6GALNAC3Q8NDV1 305 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TAF15Q92804 592 aaKnown RBP eCLIP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 LINC00479Q96M42 142 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 DSPPQ9NZW4 1301 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SLC17A2O00624 439 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NDUFB6O95139 128 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 POLR2GP62487 172 aaKnown RBP eCLIP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 FAM189BP81408 668 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ID3Q02535 119 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 MRPL2Q5T653 305 aaKnown RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NKAIN2Q5VXU1 208 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM186Q96B77 213 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NEU1Q99519 415 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 FBXL15Q9H469 300 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 JPT2Q9H910 190 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 EMCNQ9ULC0 261 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 HS3ST2Q9Y278 367 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 COA3Q9Y2R0 106 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C7orf72A4D263 438 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 M0QZQ0 153 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CHST1O43916 411 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 IGHA1P01876 353 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 IGHA2P01877 340 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 BCL2P10415 239 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CA6P23280 308 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CAPZBP47756 277 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 HOXC5Q00444 222 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 UNQ5815/PRO19632Q6UWF5 114 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 THSD4Q6ZMP0 1018 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CLEC14AQ86T13 490 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PUSL1Q8N0Z8 303 aaKnown RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C12orf76Q8N812 135 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 GPR35Q9HC97 309 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 RETNQ9HD89 108 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 PARP11Q9NR21 331 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM106BQ9NUM4 274 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 GFYI3L273 518 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TM4SF5O14894 197 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C1orf105O95561 183 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ISG15P05161 165 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 DPTQ07507 201 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SPRED3Q2MJR0 410 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 DEFB110Q30KQ9 67 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF774Q6NX45 483 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 Q6ZPB1 254 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 SH2D5Q6ZV89 423 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NEURL3Q96EH8 262 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 IL17FQ96PD4 163 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 GTSF1LQ9H1H1 148 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NPVFQ9HCQ7 196 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CR1P17927 2039 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM272A0A1B0GTI8 110 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 NPIPB11E5RHQ5 1161 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF56Q15929 161 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C9orf66Q5T8R8 295 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 ZC3H3Q8IXZ2 948 aaKnown RBP2.41□□□□□ -2.02
SCN1A-219ENST00000641575 C17orf47Q8NEP4 570 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 WNT5BQ9H1J7 359 aa2.41□□□□□ -2.02
SCN1A-219ENST00000641575 CHD9Q3L8U1 2897 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 IGKV3-7A0A075B6H7 116 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 C7orf71A4D174 169 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 NPIPB8E9PQR5 432 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 NPIPB9F8W1W9 429 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 CHKB-CPT1BH3BT56 60 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 PPP6CO00743 305 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 SYNGR3O43761 229 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 NPIPB7O75200 414 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 SPINK8P0C7L1 97 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 INAFM2P0DMQ5 153 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF250P15622 560 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM42Q69YG0 159 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 C19orf48Q6RUI8 117 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 LIN28BQ6ZN17 250 aaKnown RBP eCLIP2.4□□□□□ -2.022e-6■■□□□ 12
SCN1A-219ENST00000641575 RFLNBQ8N5W9 214 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 PQLC3Q8N755 202 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM52Q8NDY8 209 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 NT5CQ8TCD5 201 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 RNASE6Q93091 150 aaKnown RBP2.4□□□□□ -2.02
SCN1A-219ENST00000641575 WNT2BQ93097 391 aa2.4□□□□□ -2.02
SCN1A-219ENST00000641575 IFI27L2Q9H2X8 130 aa2.4□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms