RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 OR2T8A6NH00 312 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 PDCD5O14737 125 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 SLC22A5O76082 557 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 HRASP01112 189 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 HLA-DQB1P01920 261 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 C8orf88P0DMB2 117 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 GALP22466 123 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 IRF3Q14653 427 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 APRG1Q8IVJ8 170 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 MFSD4AQ8N468 514 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 NUDCD2Q8WVJ2 157 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 C5orf66Q9H5L9 145 aa11.1□□□□□ -0.63
SYNE2-228ENST00000639659 KIR2DL5BA0A0G2JN68 375 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 KIR2DL5BA0A0G2JPC4 375 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 OR4C46A6NHA9 309 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 TSPAN4O14817 238 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 TGOLN2O43493 480 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 IGLV2-14P01704 120 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 IFNA4P05014 189 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 CTXN2P0C2S0 81 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 RAB6AP20340 208 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 DTYMKP23919 212 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 MYL9P24844 172 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 TFPI2P48307 235 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 ELLP55199 621 aaPredicted RBP11.09□□□□□ -0.63
SYNE2-228ENST00000639659 MLLT11Q13015 90 aaPredicted RBP11.09□□□□□ -0.63
SYNE2-228ENST00000639659 RBMS2Q15434 407 aaKnown RBP11.09□□□□□ -0.63
SYNE2-228ENST00000639659 TIMM50Q3ZCQ8 353 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 CDNFQ49AH0 187 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 Q6ZS49 121 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 KIR2DL5AQ8N109 375 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 UBAC2Q8NBM4 344 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 KIR2DL5BQ8NHK3 375 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 CD300LFQ8TDQ1 290 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 SECTM1Q8WVN6 248 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 TMEM190Q8WZ59 177 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 GALNT14Q96FL9 552 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 C6orf62Q9GZU0 229 aaPredicted RBP11.09□□□□□ -0.63
SYNE2-228ENST00000639659 VCXQ9H320 206 aa11.09□□□□□ -0.63
SYNE2-228ENST00000639659 IGKV3-7A0A075B6H7 116 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 ERICH4A6NGS2 130 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 CGB1A6NKQ9 187 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 IFITM5A6NNB3 132 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 RGS10O43665 173 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 CTSDP07339 412 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-228ENST00000639659 ATF4P18848 351 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-228ENST00000639659 PRR20EP86478 221 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 PRR20CP86479 221 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 PRR20DP86480 221 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 PRR20BP86481 221 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 PRR20AP86496 221 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 ZNF124Q15973 351 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 OGFRL1Q5TC84 451 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-228ENST00000639659 C11orf45Q8TAV5 145 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 GATAD1Q8WUU5 269 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 RARRES2Q99969 163 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 COMMD5Q9GZQ3 224 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 MAP6D1Q9H9H5 199 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 ACOT13Q9NPJ3 140 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 DAZ1Q9NQZ3 744 aaKnown RBP11.08□□□□□ -0.64
SYNE2-228ENST00000639659 THYN1Q9P016 225 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 TPRKBQ9Y3C4 175 aa11.08□□□□□ -0.64
SYNE2-228ENST00000639659 TRAV3A0A0B4J244 114 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 TMEM235A6NFC5 223 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 DEFB4AO15263 64 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 RAB3BP20337 219 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 BRWD1-AS2P59051 145 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 GNG2P59768 71 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 OR2B8PP59922 312 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 SLC25A24Q6NUK1 477 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 ZNF66Q6ZN08 573 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 SPAG16Q8N0X2 631 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 MGLLQ99685 303 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 ZNF436Q9C0F3 470 aaPredicted RBP11.07□□□□□ -0.64
SYNE2-228ENST00000639659 CCL28Q9NRJ3 127 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 KIAA1109Q2LD37 5005 aa11.07□□□□□ -0.64
SYNE2-228ENST00000639659 IGHV3-49A0A0A0MS15 119 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 IGLC7A0M8Q6 106 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 SULT1C2O00338 296 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 EBAG9O00559 213 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 PTBP1P26599 531 aaKnown RBP eCLIP11.06□□□□□ -0.64
SYNE2-228ENST00000639659 ARL6IP1Q15041 203 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 HACD4Q5VWC8 232 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 CNIH2Q6PI25 160 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 DMBX1Q8NFW5 382 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 OR10W1Q8NGF6 305 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 OR11H2Q8NH07 326 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 OR4A5Q8NH83 315 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 HINT2Q9BX68 163 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 MFFQ9GZY8 342 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 BET1LQ9NYM9 111 aa11.06□□□□□ -0.64
SYNE2-228ENST00000639659 MPTX1A8MV57 137 aa11.05□□□□□ -0.64
SYNE2-228ENST00000639659 CYB5BO43169 146 aa11.05□□□□□ -0.64
SYNE2-228ENST00000639659 XRCC3O43542 346 aa11.05□□□□□ -0.64
SYNE2-228ENST00000639659 FCER2P06734 321 aa11.05□□□□□ -0.64
SYNE2-228ENST00000639659 OR13C7P0DN81 318 aa11.05□□□□□ -0.64
SYNE2-228ENST00000639659 PTHLHP12272 177 aa11.05□□□□□ -0.64
SYNE2-228ENST00000639659 ARPC4P59998 168 aa11.05□□□□□ -0.64
SYNE2-228ENST00000639659 EIF4EBP1Q13541 118 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-228ENST00000639659 Q56UQ5 140 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms